Strain identifier

BacDive ID: 12635

Type strain: No

Species: Acidipropionibacterium acidipropionici

Strain Designation: 61, P-21

Strain history: T. Mitsuoka <-- ATCC 4965 <-- R. Tittsler P-21.

NCBI tax ID(s): 1748 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8680

BacDive-ID: 12635

DSM-Number: 20273

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Acidipropionibacterium acidipropionici 61 is an anaerobe, mesophilic bacterium of the family Propionibacteriaceae.

NCBI tax id

  • NCBI tax id: 1748
  • Matching level: species

strain history

@refhistory
8680<- Weihenstephan, Germany <- ATCC <- R.P. Tittsler, P-21 <- E.R. Hitchner, 61 (Propionibacterium arabinosum)
67770T. Mitsuoka <-- ATCC 4965 <-- R. Tittsler P-21.

doi: 10.13145/bacdive12635.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Propionibacteriaceae
  • genus: Acidipropionibacterium
  • species: Acidipropionibacterium acidipropionici
  • full scientific name: Acidipropionibacterium acidipropionici (Orla-Jensen 1909) Scholz and Kilian 2016
  • synonyms

    • @ref: 20215
    • synonym: Propionibacterium acidipropionici

@ref: 8680

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Propionibacteriaceae

genus: Acidipropionibacterium

species: Acidipropionibacterium acidipropionici

full scientific name: Acidipropionibacterium acidipropionici (Orla-Jensen 1909) Scholz and Kilian 2016 emend. Nouioui et al. 2018

strain designation: 61, P-21

type strain: no

Culture and growth conditions

culture medium

  • @ref: 8680
  • name: PROPIONIBACTERIUM AGAR (DSMZ Medium 91)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/91
  • composition: Name: PROPIONIBACTERIUM AGAR (DSMZ Medium 91) Composition: Agar 15.0 g/l Na-lactate 10.0 g/l Casein peptone 10.0 g/l Yeast extract 5.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8680positivegrowth30mesophilic
53413positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
8680anaerobe
53413anaerobe

murein

  • @ref: 8680
  • murein short key: A41.01
  • type: A3gamma LL-Dpm-Gly

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380glutamyl-glutamate arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase+3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380glutamate decarboxylase-4.1.1.15
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase+3.2.1.55
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
8680--++-+++-+/-+-----+++-+/-+/--+/-+/-+/-+/--+/-
8680--++++++-++--+/---+++-++-++/-+/-+/--+
53413--++++++-++--++-+++--+--+++-+

Isolation, sampling and environmental information

isolation

  • @ref: 53413
  • sampling date: 1940
  • country: USA
  • origin.country: USA
  • continent: North America

taxonmaps

  • @ref: 69479
  • File name: preview.99_3995.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15360;96_2030;97_2446;98_3026;99_3995&stattab=map
  • Last taxonomy: Acidipropionibacterium acidipropionici
  • 16S sequence: LC053842
  • Sequence Identity:
  • Total samples: 22874
  • soil counts: 3020
  • aquatic counts: 3912
  • animal counts: 15402
  • plant counts: 540

Safety information

risk assessment

  • @ref: 8680
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Propionibacterium acidipropionici 16S-23S ribosomal RNA intergenic spacer region, complete sequenceAF218431309ena1748
20218Propionibacterium acidipropionici strain ATCC 4965 16S ribosomal RNA gene, partial sequenceAY5332991239ena1748
67770Propionibacterium acidipropionici gene for 16S ribosomal RNA, partial sequence, strain: JCM 6427LC0538421495ena1748

GC content

@refGC-content
868067.0
6777067

External links

@ref: 8680

culture collection no.: DSM 20273, ATCC 4965, NCDO 563, NCIB 5958, CCUG 36815, JCM 6427, IFO 13153, NBRC 13153, NCIMB 5958, VPI 5171

straininfo link

  • @ref: 81848
  • straininfo: 9784

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism16957244Use of DNA quantification to measure growth and autolysis of Lactococcus and Propionibacterium spp. in mixed populations.Treimo J, Vegarud G, Langsrud T, Rudi KAppl Environ Microbiol10.1128/AEM.00515-062006Autolysis, Biomarkers/analysis, Cheese/microbiology, Chymosin, DNA, Bacterial/*analysis/genetics/metabolism, Food Microbiology, Lactococcus/genetics/*growth & development/metabolism, Polymerase Chain Reaction, Propionibacterium/genetics/*growth & development/metabolismBiotechnology
Enzymology17462771Autolysis of propionibacteria: detection of autolytic enzymes by renaturing SDS-PAGE and additional buffer studies.Ostlie HM, Vegarud G, Langsrud TInt J Food Microbiol10.1016/j.ijfoodmicro.2007.03.0062007Bacteriolysis/drug effects/*physiology, Cheese/*microbiology, Electrophoresis, Polyacrylamide Gel/methods, *Food Microbiology, Hydrogen-Ion Concentration, Molecular Weight, Propionibacterium/*enzymology, TemperatureBiotechnology
Metabolism18386184Batch fermentation model of propionic acid production by Propionibacterium acidipropionici in different carbon sources.Coral J, Karp SG, Porto de Souza Vandenberghe L, Parada JL, Pandey A, Soccol CRAppl Biochem Biotechnol10.1007/s12010-008-8196-12008Biomass, Culture Media, Fermentation, Glycerol/metabolism, Lactic Acid/metabolism, Molasses, Propionates/*metabolism, Propionibacterium/growth & development/*metabolism, TemperatureCultivation
Metabolism20544200Glycerol/glucose co-fermentation: one more proficient process to produce propionic acid by Propionibacterium acidipropionici.Liu Y, Zhang YG, Zhang RB, Zhang F, Zhu JCurr Microbiol10.1007/s00284-010-9683-52010Carbon/metabolism, Fermentation, Glucose/*metabolism, Glycerol/*metabolism, Propionates/*metabolism, Propionibacterium/*metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8680Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20273)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20273
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
53413Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 36815)https://www.ccug.se/strain?id=36815
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
81848Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID9784.1StrainInfo: A central database for resolving microbial strain identifiers