Strain identifier

BacDive ID: 12626

Type strain: Yes

Species: Microlunatus ginsengisoli

Strain history: CIP <- 2007, DSMZ <- S. T. Lee <- W. T. Im, Korea Ad. Inst. Technol., Guseong-dong, Daejon, Korea: strain Gsoil 633

NCBI tax ID(s): 363863 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 7279

BacDive-ID: 12626

DSM-Number: 17942

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, coccus-shaped

description: Microlunatus ginsengisoli DSM 17942 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil, ginseng field.

NCBI tax id

  • NCBI tax id: 363863
  • Matching level: species

strain history

@refhistory
7279<- Sung-Taik Lee <- Wan-Taek Im, Gsoil 633
67770W.-T. Im Gsoil 633.
67771<- ST Lee, KAIST
119627CIP <- 2007, DSMZ <- S. T. Lee <- W. T. Im, Korea Ad. Inst. Technol., Guseong-dong, Daejon, Korea: strain Gsoil 633

doi: 10.13145/bacdive12626.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Propionibacteriaceae
  • genus: Microlunatus
  • species: Microlunatus ginsengisoli
  • full scientific name: Microlunatus ginsengisoli Cui et al. 2007

@ref: 7279

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Propionibacteriaceae

genus: Microlunatus

species: Microlunatus ginsengisoli

full scientific name: Microlunatus ginsengisoli Cui et al. 2007

type strain: yes

Morphology

cell morphology

@refgram staincell widthcell shapemotility
31819positive0.5-0.8 µmcoccus-shapedno
67771positive
119627positivecoccus-shapedno

colony morphology

  • @ref: 19757
  • colony color: Honey yellow (1005)
  • incubation period: 10-14 days
  • medium used: ISP 3

multicellular morphology

  • @ref: 19757
  • forms multicellular complex: no
  • medium name: ISP 3

pigmentation

  • @ref: 31819
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7279MICROLUNATUS MEDIUM (DSMZ Medium 776)yeshttps://mediadive.dsmz.de/medium/776Name: MICROLUNATUS MEDIUM (DSMZ Medium 776) Composition: KH2PO4 0.5 g/l Na glutamate 0.5 g/l Yeast extract 0.5 g/l Peptone 0.5 g/l Glucose 0.5 g/l (NH4)2SO4 0.1 g/l MgSO4 x 7 H2O 0.1 g/l Distilled water
19757ISP 3yesName: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
33312MEDIUM 135 - for Microlunatus phosphovorus and Microsphaera multipartitayesDistilled water make up to (1000.000 ml);Magnesium sulphate heptahydrate (0.100 g);Agar (18.000 g);Glucose (0.500 g);Yeast extract (0.500 g);Ammonium sulphate (0.100 g);Peptone (0.500 g);Potassium di-hydrogen phosphate (0.440 g);Sodium glutamate (0.500 g)
119627CIP Medium 135yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=135

culture temp

@refgrowthtypetemperaturerange
7279positivegrowth28mesophilic
19757positiveoptimum28mesophilic
31819positivegrowth16-37
31819positiveoptimum20-30
33312positivegrowth25mesophilic
67770positivegrowth28mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
31819positivegrowth5.5-8.5alkaliphile
31819positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31819aerobe
67771aerobe

spore formation

  • @ref: 31819
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
31819NaClpositivegrowth04-05 %
31819NaClpositiveoptimum4.5 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3181915963ribitol+carbon source
3181916449alanine+carbon source
3181922653asparagine+carbon source
3181935391aspartate+carbon source
3181923652dextrin+carbon source
3181928757fructose+carbon source
3181927570histidine+carbon source
3181924996lactate+carbon source
3181925115malate+carbon source
3181928044phenylalanine+carbon source
3181926271proline+carbon source
3181917272propionate+carbon source
3181916634raffinose+carbon source
3181926546rhamnose+carbon source
3181933942ribose+carbon source
3181917814salicin+carbon source
3181930911sorbitol+carbon source
3181917992sucrose+carbon source
3181927082trehalose+carbon source
3181931011valerate+carbon source
3181918222xylose+carbon source
3181917632nitrate+reduction
11962717632nitrate+reduction
11962716301nitrite-reduction
6837917632nitrate-reduction
683794853esculin+hydrolysis
6837916199urea+hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose+fermentation
6837928087glycogen-fermentation

metabolite production

  • @ref: 119627
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
31819catalase+1.11.1.6
68379gelatinase+
68379urease+3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase+3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase+3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
119627oxidase-
119627catalase+1.11.1.6
119627urease+3.5.1.5
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
19757---++++++++------+-

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- FucosidaseControl
19757+-+-+----+-++-+++++
119627-+--+----++-+-++----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7279soil, ginseng fieldPocheon ProvinceRepublic of KoreaKORAsia
67770Soil from a ginseng fieldPocheon ProvinceRepublic of KoreaKORAsia
67771From soil of the ginseng fieldRepublic of KoreaKORAsia
119627Environment, Soil, ginseng fieldPocheonRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_132832.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_72;96_3710;97_4562;98_20755;99_132832&stattab=map
  • Last taxonomy: Microlunatus ginsengisoli subclade
  • 16S sequence: AB245389
  • Sequence Identity:
  • Total samples: 558
  • soil counts: 427
  • aquatic counts: 28
  • animal counts: 94
  • plant counts: 9

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
72791Risk group (German classification)
197571Risk group (German classification)
1196271Risk group (French classification)

Sequence information

16S sequences

  • @ref: 7279
  • description: Microlunatus ginsengisoli gene for 16S rRNA, partial sequence, strain: Gsoil 633
  • accession: AB245389
  • length: 1472
  • database: ena
  • NCBI tax ID: 363863

GC content

@refGC-contentmethod
727969.8
6777069.8high performance liquid chromatography (HPLC)

External links

@ref: 7279

culture collection no.: DSM 17942, CIP 109594, KCTC 13940, Gsoil 633, JCM 16929, JCM 15306

straininfo link

  • @ref: 81840
  • straininfo: 302767

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17392192Microlunatus ginsengisoli sp. nov., isolated from soil of a ginseng field.Cui YS, Im WT, Yin CR, Yang DC, Lee STInt J Syst Evol Microbiol10.1099/ijs.0.64395-02007DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Korea, Molecular Sequence Data, Panax/*microbiology, Phylogeny, Propionibacteriaceae/*classification/genetics/*isolation & purification/physiology, RNA, Ribosomal, 16S/genetics, *Soil MicrobiologyGenetics
Phylogeny19946055Microlunatus parietis sp. nov., isolated from an indoor wall.Kampfer P, Schafer J, Lodders N, Martin KInt J Syst Evol Microbiol10.1099/ijs.0.020115-02009Bacterial Typing Techniques, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, *Environmental Microbiology, Fatty Acids, Molecular Sequence Data, Mycolic Acids/analysis, Phospholipids/analysis, Phylogeny, Propionibacteriaceae/chemistry/*classification/genetics/*isolation & purification, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny32886594Microlunatus elymi sp. nov., a novel actinobacterium isolated from rhizospheric soil of the wild plant Elymus tsukushiensis.Son JS, Lee SY, Hwang YJ, Shin JH, Ghim SYInt J Syst Evol Microbiol10.1099/ijsem.0.0044282020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Elymus/*microbiology, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Propionibacteriaceae/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
7279Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17942)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17942
19757Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM17942.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31819Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2808628776041
33312Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7355
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
81840Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID302767.1StrainInfo: A central database for resolving microbial strain identifiers
119627Curators of the CIPCollection of Institut Pasteur (CIP 109594)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109594