Strain identifier

BacDive ID: 12624

Type strain: Yes

Species: Luteococcus sanguinis

Strain history: CIP <- 2001, CCUG <- A. Nyberg, Sundsvall, Sweden

NCBI tax ID(s): 174038 (species)

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General

@ref: 6691

BacDive-ID: 12624

DSM-Number: 17027

keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, coccus-shaped, human pathogen

description: Luteococcus sanguinis DSM 17027 is a facultative anaerobe, mesophilic, Gram-positive human pathogen that was isolated from human blood, 32 years old man.

NCBI tax id

  • NCBI tax id: 174038
  • Matching level: species

strain history

@refhistory
6691<- CCUG <- A. Nyberg, PHL; B720-721
67770CCUG 33897 <-- A. Nyberg B720-721.
122426CIP <- 2001, CCUG <- A. Nyberg, Sundsvall, Sweden

doi: 10.13145/bacdive12624.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Propionibacteriaceae
  • genus: Luteococcus
  • species: Luteococcus sanguinis
  • full scientific name: Luteococcus sanguinis Collins et al. 2003

@ref: 6691

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Propionibacteriaceae

genus: Luteococcus

species: Luteococcus sanguinis

full scientific name: Luteococcus sanguinis Collins et al. 2003

type strain: yes

Morphology

cell morphology

  • @ref: 122426
  • gram stain: positive
  • cell shape: coccus-shaped

colony morphology

  • @ref: 122426

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6691COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
6691TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
33692MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
122426CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
6691positivegrowth37mesophilic
33692positivegrowth37mesophilic
67770positivegrowth37mesophilic
122426positivegrowth10-37
122426nogrowth41thermophilic
122426nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 122426
  • oxygen tolerance: facultative anaerobe

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4)

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol+builds acid from18403
68371D-arabitol+builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose+builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol+builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol+builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol+builds acid from17113
68371glycerol+builds acid from17754
122426hippurate+hydrolysis606565
122426nitrate+reduction17632
122426nitrite-reduction16301
68379nitrate+reduction17632
68379esculin+hydrolysis4853
68379urea-hydrolysis16199
68379gelatin+hydrolysis5291
68379D-glucose+fermentation17634
68379D-ribose-fermentation16988
68379D-xylose-fermentation65327
68379D-mannitol+fermentation16899
68379maltose+fermentation17306
68379lactose+fermentation17716
68379sucrose+fermentation17992
68379glycogen+fermentation28087

metabolite tests

  • @ref: 122426
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68379catalase+1.11.1.6
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase+3.5.1.B15
122426oxidase-
122426alcohol dehydrogenase-1.1.1.1
122426gelatinase-
122426amylase+
122426caseinase-3.4.21.50
122426catalase+1.11.1.6
122426tween esterase-
122426gamma-glutamyltransferase-2.3.2.2
122426lecithinase-
122426lipase-
122426lysine decarboxylase-4.1.1.18
122426ornithine decarboxylase-4.1.1.17
122426phenylalanine ammonia-lyase-4.3.1.24
122426protease+
122426urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382naphthol-AS-BI-phosphohydrolase+
68382beta-glucuronidase-3.2.1.31
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
51806++++-++-+-+-+--++++++

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
51806-+-+-+++++++++-++---
122426-++--++----+----+---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
122426++--+--+-++++----++---+++++++-++-+-++-++----+++--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
122426+++++-++-+++---++-++--+--++++--+-+++++--+-------++------+---+--------------+------+-------+-----+--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
6691human blood, 32 years old manSundswall, SwedenSwedenSWEEurope
51806Human blood,32-yr-old man,1/4 bottles,erysipelasSundsvallSwedenSWEEurope1995-01-30
67770Human blood
122426Human, BloodSwedenSWEEurope

isolation source categories

Cat1Cat2Cat3
#Host#Human#Male
#Host Body Product#Fluids#Blood

taxonmaps

  • @ref: 69479
  • File name: preview.99_74724.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15360;96_18195;97_40125;98_52258;99_74724&stattab=map
  • Last taxonomy: Luteococcus sanguinis subclade
  • 16S sequence: AJ416758
  • Sequence Identity:
  • Total samples: 266
  • soil counts: 16
  • aquatic counts: 171
  • animal counts: 69
  • plant counts: 10

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
6691yes, in single cases1Risk group (German classification)
1224261Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6691
  • description: Luteococcus sanguinus 16S rRNA gene, strain CCUG 33897T
  • accession: AJ416758
  • length: 1368
  • database: ena
  • NCBI tax ID: 174038

GC content

  • @ref: 6691
  • GC-content: 64

External links

@ref: 6691

culture collection no.: DSM 17027, CCUG 33897, CIP 107216, JCM 12371

straininfo link

  • @ref: 81838
  • straininfo: 57103

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny14657119Luteococcus sanguinis sp. nov., isolated from human blood.Collins MD, Hutson RA, Nikolaitchouk N, Nyberg A, Falsen EInt J Syst Evol Microbiol10.1099/ijs.0.02236-02003Blood/*microbiology, Humans, Molecular Sequence Data, *Phylogeny, Propionibacteriaceae/*classification/isolation & purification/physiologyPathogenicity
Phylogeny24812361Luteococcus sediminum sp. nov., isolated from deep subseafloor sediment of the South Pacific Gyre.Fan X, Zhang Z, Li Z, Zhang XHInt J Syst Evol Microbiol10.1099/ijs.0.058529-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Pacific Ocean, Peptidoglycan/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, Propionibacteriaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitle
6691Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17027)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17027
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
33692Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4627
51806Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 33897)https://www.ccug.se/strain?id=33897
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
81838Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID57103.1StrainInfo: A central database for resolving microbial strain identifiers
122426Curators of the CIPCollection of Institut Pasteur (CIP 107216)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107216