Strain identifier

BacDive ID: 12623

Type strain: Yes

Species: Luteococcus peritonei

Strain Designation: 5-3790

Strain history: CIP <- 2000, CCUG <- PHL, Skövde, Sweden

NCBI tax ID(s): 88874 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6038

BacDive-ID: 12623

DSM-Number: 15826

keywords: 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, coccus-shaped

description: Luteococcus peritonei 5-3790 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from human peritoneum, foetus autopsy.

NCBI tax id

  • NCBI tax id: 88874
  • Matching level: species

strain history

@refhistory
6038<- CCUG <- B. Claesson, PHL, Sweden
67770CCUG 38120 <-- B. Claesson.
121681CIP <- 2000, CCUG <- PHL, Skövde, Sweden

doi: 10.13145/bacdive12623.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Propionibacteriaceae
  • genus: Luteococcus
  • species: Luteococcus peritonei
  • full scientific name: Luteococcus peritonei Collins et al. 2000

@ref: 6038

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Propionibacteriaceae

genus: Luteococcus

species: Luteococcus peritonei

full scientific name: Luteococcus peritonei Collins et al. 2000

strain designation: 5-3790

type strain: yes

Morphology

cell morphology

  • @ref: 121681
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

colony morphology

  • @ref: 121681

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6038CHOCOLATE AGAR (DSMZ Medium 429b)yeshttps://mediadive.dsmz.de/medium/429bName: CHOCOLATE AGAR (DSMZ Medium 429b) Composition: Horse blood 100.0 g/l Sheep blood 100.0 g/l Columbia agar base
6038MODIFIED MEDIUM 92 (DSMZ Medium 92a)yeshttps://mediadive.dsmz.de/medium/92aName: MODIFIED MEDIUM 92 (DSMZ Medium 92a) Composition: Trypticase soy broth 29.7 g/l Agar 14.85 g/l Yeast extract 2.97 g/l Pyridoxine hydrochloride 0.0001 g/l Calcium pantothenate 5e-05 g/l Nicotinic acid 5e-05 g/l Riboflavin 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l p-Aminobenzoic acid 1e-05 g/l Vitamin B12 1e-07 g/l Distilled water
39526MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and NeisseriayesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml)
121681CIP Medium 10yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=10

culture temp

@refgrowthtypetemperaturerange
6038positivegrowth30mesophilic
39526positivegrowth30mesophilic
67770positivegrowth30mesophilic
121681positivegrowth22-41
121681nogrowth10psychrophilic
121681nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
6038microaerophile
6038aerobe
121681facultative anaerobe

observation

  • @ref: 67770
  • observation: quinones: MK-9(II,III-H4)

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol+builds acid from18403
68371D-arabitol+builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose+builds acid from28066
68371glycogen+builds acid from28087
68371raffinose+builds acid from16634
68371melezitose+builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol+builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol+builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol+builds acid from17113
68371glycerol+builds acid from17754
121681hippurate-hydrolysis606565
121681nitrate+reduction17632
121681nitrite-reduction16301

metabolite production

  • @ref: 121681
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 121681
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
121681oxidase+
121681beta-galactosidase+3.2.1.23
121681alcohol dehydrogenase-1.1.1.1
121681gelatinase-
121681amylase-
121681DNase-
121681caseinase+3.4.21.50
121681catalase+1.11.1.6
121681tween esterase-
121681gamma-glutamyltransferase+2.3.2.2
121681lecithinase-
121681lipase-
121681lysine decarboxylase-4.1.1.18
121681ornithine decarboxylase-4.1.1.17
121681phenylalanine ammonia-lyase-4.3.1.24
121681protease-
121681urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase+3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121681-++++++++-+++++++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
121681++-----+-++++----++---+++++/-+++++-+++/-++/-++----++---

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
121681--++----------+---++--+-+------+-+--++--+------------+---+--+-------------------------+----------++

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dategeographic locationisolation date
6038human peritoneum, foetus autopsySwedenSWEEurope
54085Human peritoneum,foetus,autopsySwedenSWEEurope1997-06-01Skövde
67770Human peritoneum during a foetal autopsySwedenSWEEurope
121681Human, PeritoneumSwedenSWEEuropeSkövde1997

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Gastrointestinal tract#Stomach
#Host Body Product#Urogenital tract#Abort

taxonmaps

  • @ref: 69479
  • File name: preview.99_154847.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15360;96_47897;97_75733;98_102116;99_154847&stattab=map
  • Last taxonomy: Luteococcus peritonei subclade
  • 16S sequence: AJ132334
  • Sequence Identity:
  • Total samples: 50
  • aquatic counts: 6
  • animal counts: 23
  • plant counts: 21

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
60381Risk group (German classification)
1216811Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6038
  • description: Luteococcus sp. CCUG38120 16S rRNA gene
  • accession: AJ132334
  • length: 1454
  • database: ena
  • NCBI tax ID: 88874

GC content

  • @ref: 6038
  • GC-content: 65

External links

@ref: 6038

culture collection no.: DSM 15826, ATCC BAA 60, CCUG 38120, CIP 106441, JCM 11685, CCM 7172

straininfo link

  • @ref: 81837
  • straininfo: 44277

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny10826802Luteococcus peritonei sp. nov., isolated from the human peritoneum.Collins MD, Lawson PA, Nikolaitchouk N, Falsen EInt J Syst Evol Microbiol10.1099/00207713-50-1-1792000Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fetus, Genes, rRNA, Gram-Positive Bacterial Infections/*microbiology, Humans, Molecular Sequence Data, Peritoneum/*microbiology, Phylogeny, Propionibacteriaceae/*classification/cytology/isolation & purification/physiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAPathogenicity
Phylogeny24812361Luteococcus sediminum sp. nov., isolated from deep subseafloor sediment of the South Pacific Gyre.Fan X, Zhang Z, Li Z, Zhang XHInt J Syst Evol Microbiol10.1099/ijs.0.058529-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Pacific Ocean, Peptidoglycan/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, Propionibacteriaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitle
6038Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15826)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15826
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
39526Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18572
54085Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 38120)https://www.ccug.se/strain?id=38120
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
81837Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID44277.1StrainInfo: A central database for resolving microbial strain identifiers
121681Curators of the CIPCollection of Institut Pasteur (CIP 106441)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106441