Strain identifier
BacDive ID: 12623
Type strain:
Species: Luteococcus peritonei
Strain Designation: 5-3790
Strain history: CIP <- 2000, CCUG <- PHL, Skövde, Sweden
NCBI tax ID(s): 88874 (species)
General
@ref: 6038
BacDive-ID: 12623
DSM-Number: 15826
keywords: 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, coccus-shaped
description: Luteococcus peritonei 5-3790 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from human peritoneum, foetus autopsy.
NCBI tax id
- NCBI tax id: 88874
- Matching level: species
strain history
@ref | history |
---|---|
6038 | <- CCUG <- B. Claesson, PHL, Sweden |
67770 | CCUG 38120 <-- B. Claesson. |
121681 | CIP <- 2000, CCUG <- PHL, Skövde, Sweden |
doi: 10.13145/bacdive12623.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Propionibacteriaceae
- genus: Luteococcus
- species: Luteococcus peritonei
- full scientific name: Luteococcus peritonei Collins et al. 2000
@ref: 6038
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Propionibacteriaceae
genus: Luteococcus
species: Luteococcus peritonei
full scientific name: Luteococcus peritonei Collins et al. 2000
strain designation: 5-3790
type strain: yes
Morphology
cell morphology
- @ref: 121681
- gram stain: positive
- cell shape: coccus-shaped
- motility: no
colony morphology
- @ref: 121681
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
6038 | CHOCOLATE AGAR (DSMZ Medium 429b) | yes | https://mediadive.dsmz.de/medium/429b | Name: CHOCOLATE AGAR (DSMZ Medium 429b) Composition: Horse blood 100.0 g/l Sheep blood 100.0 g/l Columbia agar base |
6038 | MODIFIED MEDIUM 92 (DSMZ Medium 92a) | yes | https://mediadive.dsmz.de/medium/92a | Name: MODIFIED MEDIUM 92 (DSMZ Medium 92a) Composition: Trypticase soy broth 29.7 g/l Agar 14.85 g/l Yeast extract 2.97 g/l Pyridoxine hydrochloride 0.0001 g/l Calcium pantothenate 5e-05 g/l Nicotinic acid 5e-05 g/l Riboflavin 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l p-Aminobenzoic acid 1e-05 g/l Vitamin B12 1e-07 g/l Distilled water |
39526 | MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and Neisseria | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml) | |
121681 | CIP Medium 10 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=10 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
6038 | positive | growth | 30 | mesophilic |
39526 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
121681 | positive | growth | 22-41 | |
121681 | no | growth | 10 | psychrophilic |
121681 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
6038 | microaerophile |
6038 | aerobe |
121681 | facultative anaerobe |
observation
- @ref: 67770
- observation: quinones: MK-9(II,III-H4)
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | + | builds acid from | 18403 |
68371 | D-arabitol | + | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | + | builds acid from | 32528 |
68371 | gentiobiose | + | builds acid from | 28066 |
68371 | glycogen | + | builds acid from | 28087 |
68371 | raffinose | + | builds acid from | 16634 |
68371 | melezitose | + | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | + | builds acid from | 27082 |
68371 | sucrose | + | builds acid from | 17992 |
68371 | melibiose | + | builds acid from | 28053 |
68371 | lactose | + | builds acid from | 17716 |
68371 | maltose | + | builds acid from | 17306 |
68371 | salicin | + | builds acid from | 17814 |
68371 | esculin | + | builds acid from | 4853 |
68371 | arbutin | + | builds acid from | 18305 |
68371 | amygdalin | + | builds acid from | 27613 |
68371 | N-acetylglucosamine | - | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | + | builds acid from | 17924 |
68371 | D-mannitol | + | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | + | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | + | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | + | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | - | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | + | builds acid from | 17113 |
68371 | glycerol | + | builds acid from | 17754 |
121681 | hippurate | - | hydrolysis | 606565 |
121681 | nitrate | + | reduction | 17632 |
121681 | nitrite | - | reduction | 16301 |
metabolite production
- @ref: 121681
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 121681
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
121681 | oxidase | + | |
121681 | beta-galactosidase | + | 3.2.1.23 |
121681 | alcohol dehydrogenase | - | 1.1.1.1 |
121681 | gelatinase | - | |
121681 | amylase | - | |
121681 | DNase | - | |
121681 | caseinase | + | 3.4.21.50 |
121681 | catalase | + | 1.11.1.6 |
121681 | tween esterase | - | |
121681 | gamma-glutamyltransferase | + | 2.3.2.2 |
121681 | lecithinase | - | |
121681 | lipase | - | |
121681 | lysine decarboxylase | - | 4.1.1.18 |
121681 | ornithine decarboxylase | - | 4.1.1.17 |
121681 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
121681 | protease | - | |
121681 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | + | 3.2.1.22 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | beta-glucuronidase | + | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121681 | - | + | + | + | + | + | + | + | + | - | + | + | + | + | + | + | + | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121681 | + | + | - | - | - | - | - | + | - | + | + | + | + | - | - | - | - | + | + | - | - | - | + | + | + | + | +/- | + | + | + | + | + | - | + | + | +/- | + | +/- | + | + | - | - | - | - | + | + | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121681 | - | - | + | + | - | - | - | - | - | - | - | - | - | - | + | - | - | - | + | + | - | - | + | - | + | - | - | - | - | - | - | + | - | + | - | - | + | + | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | + | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | + | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | sampling date | geographic location | isolation date |
---|---|---|---|---|---|---|---|
6038 | human peritoneum, foetus autopsy | Sweden | SWE | Europe | |||
54085 | Human peritoneum,foetus,autopsy | Sweden | SWE | Europe | 1997-06-01 | Skövde | |
67770 | Human peritoneum during a foetal autopsy | Sweden | SWE | Europe | |||
121681 | Human, Peritoneum | Sweden | SWE | Europe | Skövde | 1997 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body-Site | #Gastrointestinal tract | #Stomach |
#Host Body Product | #Urogenital tract | #Abort |
taxonmaps
- @ref: 69479
- File name: preview.99_154847.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15360;96_47897;97_75733;98_102116;99_154847&stattab=map
- Last taxonomy: Luteococcus peritonei subclade
- 16S sequence: AJ132334
- Sequence Identity:
- Total samples: 50
- aquatic counts: 6
- animal counts: 23
- plant counts: 21
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
6038 | 1 | Risk group (German classification) |
121681 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 6038
- description: Luteococcus sp. CCUG38120 16S rRNA gene
- accession: AJ132334
- length: 1454
- database: ena
- NCBI tax ID: 88874
GC content
- @ref: 6038
- GC-content: 65
External links
@ref: 6038
culture collection no.: DSM 15826, ATCC BAA 60, CCUG 38120, CIP 106441, JCM 11685, CCM 7172
straininfo link
- @ref: 81837
- straininfo: 44277
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 10826802 | Luteococcus peritonei sp. nov., isolated from the human peritoneum. | Collins MD, Lawson PA, Nikolaitchouk N, Falsen E | Int J Syst Evol Microbiol | 10.1099/00207713-50-1-179 | 2000 | Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fetus, Genes, rRNA, Gram-Positive Bacterial Infections/*microbiology, Humans, Molecular Sequence Data, Peritoneum/*microbiology, Phylogeny, Propionibacteriaceae/*classification/cytology/isolation & purification/physiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Pathogenicity |
Phylogeny | 24812361 | Luteococcus sediminum sp. nov., isolated from deep subseafloor sediment of the South Pacific Gyre. | Fan X, Zhang Z, Li Z, Zhang XH | Int J Syst Evol Microbiol | 10.1099/ijs.0.058529-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Pacific Ocean, Peptidoglycan/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, Propionibacteriaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
6038 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15826) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15826 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
39526 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/18572 | ||
54085 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 38120) | https://www.ccug.se/strain?id=38120 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
68371 | Automatically annotated from API 50CH acid | |||
68382 | Automatically annotated from API zym | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
81837 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID44277.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
121681 | Curators of the CIP | Collection of Institut Pasteur (CIP 106441) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106441 |