Strain identifier

BacDive ID: 12622

Type strain: No

Species: Luteococcus japonicus

Strain history: CIP <- 1994, IFO <- CCM <- M. Oda, Japan

NCBI tax ID(s): 33984 (species)

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General

@ref: 3921

BacDive-ID: 12622

DSM-Number: 10547

keywords: Bacteria, aerobe, mesophilic

description: Luteococcus japonicus CCUG 38729 is an aerobe, mesophilic bacterium that was isolated from water for brewing sake "Miyamizu".

NCBI tax id

  • NCBI tax id: 33984
  • Matching level: species

strain history

@refhistory
3921<- IFO <- CCM <- M. Oda, OUT 8100
120320CIP <- 1994, IFO <- CCM <- M. Oda, Japan

doi: 10.13145/bacdive12622.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Propionibacteriaceae
  • genus: Luteococcus
  • species: Luteococcus japonicus
  • full scientific name: Luteococcus japonicus Tamura et al. 1994

@ref: 3921

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Propionibacteriaceae

genus: Luteococcus

species: Luteococcus japonicus

full scientific name: Luteococcus japonicus Tamura et al. 1994

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3921TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
34657MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
120320CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
3921positivegrowth28mesophilic
34657positivegrowth30mesophilic
54420positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 54420
  • oxygen tolerance: aerobe

murein

  • @ref: 3921
  • murein short key: A41.01
  • type: A3gamma LL-Dpm-Gly

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838129016arginine-hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol+builds acid from
6838130911sorbitol+builds acid from
6838117716lactose-builds acid from
6838127082trehalose+builds acid from
6838116634raffinose-builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol+builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose+builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea+hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68381urease+3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase+
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase+3.4.19.3
68381beta-galactosidase+3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase+3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
54420-+---+----+-++-++---

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
54420-++-+--++-+-+-+---++-+---+-+---+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
3921water for brewing sake "Miyamizu"Japan, Hyogo PrefectureJapanJPNAsia
54420Brewing water 'Miyamizu'KobeJapanJPNAsia
120320Environment, Brewing waterKobeJapanJPNAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Fermented
#Environmental#Aquatic
#Engineered#Food production#Beverage

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
39211Risk group (German classification)
1203201Risk group (French classification)

External links

@ref: 3921

culture collection no.: CCUG 38729, DSM 10547, ATCC 51527, CCM 2142, CIP 104066, IFO 15385, NBRC 15385, OUT 8100

straininfo link

  • @ref: 81836
  • straininfo: 386984

literature

  • topic: Phylogeny
  • Pubmed-ID: 8186101
  • title: Luteococcus japonicus gen. nov., sp. nov., a new gram-positive coccus with LL-diaminopimelic acid in the cell wall.
  • authors: Tamura T, Takeuchi M, Yokota A
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-44-2-348
  • year: 1994
  • mesh: Base Composition, Base Sequence, Cell Wall/*chemistry, DNA, Ribosomal/genetics, Diaminopimelic Acid/*analysis, Fatty Acids/analysis, Gram-Positive Cocci/*chemistry/*classification/ultrastructure, Molecular Sequence Data, Phenotype, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Stereoisomerism, Vitamin K/analysis
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
3921Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10547)https://www.dsmz.de/collection/catalogue/details/culture/DSM-10547
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
34657Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15932
54420Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 38729)https://www.ccug.se/strain?id=38729
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
81836Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID386984.1StrainInfo: A central database for resolving microbial strain identifiers
120320Curators of the CIPCollection of Institut Pasteur (CIP 104066)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104066