Strain identifier
BacDive ID: 12608
Type strain: 
Species: Promicromonospora thailandica
Strain Designation: S7F-02
Strain history: C. Thawai S7F-02.
NCBI tax ID(s): 765201 (species)
version 8.1 (current version)
General
@ref: 18265
BacDive-ID: 12608
DSM-Number: 26652
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Promicromonospora thailandica S7F-02 is a mesophilic, Gram-positive bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 765201
- Matching level: species
strain history
| @ref | history |
|---|---|
| 18265 | <- JCM; JCM 17130 <- C. Thawai; S7F-02 |
| 67770 | C. Thawai S7F-02. |
doi: 10.13145/bacdive12608.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Promicromonosporaceae
- genus: Promicromonospora
- species: Promicromonospora thailandica
- full scientific name: Promicromonospora thailandica Thawai and Kudo 2012
@ref: 18265
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Promicromonosporaceae
genus: Promicromonospora
species: Promicromonospora thailandica
full scientific name: Promicromonospora thailandica Thawai and Kudo 2012 emend. Nouioui et al. 2018
strain designation: S7F-02
type strain: yes
Morphology
cell morphology
- @ref: 30432
- gram stain: positive
- motility: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 18265 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf | |
| 18265 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 18265 | positive | growth | 28 | mesophilic |
| 30432 | positive | optimum | 27.5 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
culture pH
- @ref: 30432
- ability: positive
- type: growth
- pH: 06-09
- PH range: alkaliphile
Physiology and metabolism
spore formation
- @ref: 30432
- spore formation: no
halophily
- @ref: 30432
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: <6 %
observation
- @ref: 67770
- observation: quinones: MK-9(H4), MK-9(H6)
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30432 | 22599 | arabinose | + | carbon source |
| 30432 | 28260 | galactose | + | carbon source |
| 30432 | 17754 | glycerol | + | carbon source |
| 30432 | 29864 | mannitol | + | carbon source |
| 30432 | 16634 | raffinose | + | carbon source |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 18265 | marine sediment | Andaman Sea, Trang Province | Thailand | THA | Asia |
| 67770 | Marine sediment from the Andaman Sea in Trang Province | Thailand | THA | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_3773.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_1939;97_2331;98_2876;99_3773&stattab=map
- Last taxonomy: Promicromonospora
- 16S sequence: AB560974
- Sequence Identity:
- Total samples: 1696
- soil counts: 474
- aquatic counts: 57
- animal counts: 703
- plant counts: 462
Safety information
risk assessment
- @ref: 18265
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18265
- description: Promicromonospora thailandica gene for 16S ribosomal RNA, partial sequence
- accession: AB560974
- length: 1471
- database: ena
- NCBI tax ID: 765201
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Promicromonospora thailandica DSM 26652 | 2596583655 | draft | img | 765201 |
| 66792 | Promicromonospora thailandica DSM 26652 | GCA_024171955 | scaffold | ncbi | 765201 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 18265 | 70.6 | |
| 67770 | 73.1 | genome sequence analysis |
| 67770 | 70.6 | high performance liquid chromatography (HPLC) |
External links
@ref: 18265
culture collection no.: DSM 26652, BCC 41922, JCM 17130, NBRC 112721
straininfo link
- @ref: 81822
- straininfo: 407877
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 22058317 | Promicromonospora thailandica sp. nov., isolated from marine sediment. | Thawai C, Kudo T | Int J Syst Evol Microbiol | 10.1099/ijs.0.035972-0 | 2011 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments, Molecular Sequence Data, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Thailand, *Water Microbiology | Genetics |
| Phylogeny | 29779147 | Promicromonospora viridis sp. nov., a novel actinomycete isolated from soil. | Jin L, Zhao J, Jiang S, Zhao Y, Han X, Guo X, Wang X, Xiang W | Antonie Van Leeuwenhoek | 10.1007/s10482-018-1099-4 | 2018 | Actinobacteria/*genetics, Phospholipids/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Soil Microbiology | Metabolism |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|---|
| 18265 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26652) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26652 | ||||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
| 30432 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26768 | 28776041 | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | ||||
| 81822 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID407877.1 | StrainInfo: A central database for resolving microbial strain identifiers |