Strain identifier

BacDive ID: 1258

Type strain: Yes

Species: Rossellomorea vietnamensis

Strain Designation: 15-1

Strain history: CIP <- 2005, JCM <- 2001, O. Shida, HSCC, Chiba, Japan <- K. Mura: strain 15-1

NCBI tax ID(s): 1349757 (strain), 218284 (species)

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General

@ref: 7764

BacDive-ID: 1258

DSM-Number: 18898

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Rossellomorea vietnamensis 15-1 is an aerobe, spore-forming, mesophilic bacterium that was isolated from vietnamese fish sauce.

NCBI tax id

NCBI tax idMatching level
1349757strain
218284species

strain history

@refhistory
7764<- CIP <- JCM <- O. Shida, HSCC, Chiba <- K. Mura; 15-1
67770HSCC 1663 <-- K. Mura 15-1.
123837CIP <- 2005, JCM <- 2001, O. Shida, HSCC, Chiba, Japan <- K. Mura: strain 15-1

doi: 10.13145/bacdive1258.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Rossellomorea
  • species: Rossellomorea vietnamensis
  • full scientific name: Rossellomorea vietnamensis (Noguchi et al. 2004) Gupta et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Bacillus vietnamensis

@ref: 7764

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Rossellomorea

species: Rossellomorea vietnamensis

full scientific name: Rossellomorea vietnamensis (Noguchi et al. 2004) Gupta et al. 2020

strain designation: 15-1

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
30062positive2.5 µm0.75 µmrod-shapedyes
123837positiverod-shapedyes

colony morphology

  • @ref: 123837

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7764CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
38287MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123837CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
7764positivegrowth30mesophilic
30062positivegrowth10-40
30062positiveoptimum35mesophilic
38287positivegrowth30mesophilic
67770positivegrowth30mesophilic
123837positivegrowth10-45
123837nogrowth55thermophilic

culture pH

@refabilitytypepHPH range
30062positivegrowth6.5-10alkaliphile
30062positiveoptimum8.25

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30062aerobe
123837obligate aerobe

spore formation

@refspore formation
30062yes
123837yes

halophily

@refsaltgrowthtested relationconcentration
30062NaClpositivegrowth0-15 %
30062NaClpositiveoptimum1 %
123837NaClpositivegrowth0-10 %

observation

  • @ref: 67770
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
300625291gelatin+carbon source
3006224265gluconate+carbon source
3006217234glucose+carbon source
3006225115malate+carbon source
3006217306maltose+carbon source
3006229864mannitol+carbon source
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen+builds acid from
6837128017starch+builds acid from
683716731melezitose-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose+builds acid from
683714853esculin-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
12383716947citrate-carbon source
1238374853esculin+hydrolysis
123837606565hippurate+hydrolysis
12383717632nitrate-reduction
12383716301nitrite-reduction
12383717632nitrate-respiration

metabolite production

  • @ref: 123837
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12383715688acetoin-
12383717234glucose-

enzymes

@refvalueactivityec
30062catalase+1.11.1.6
30062cytochrome oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
123837oxidase+
123837beta-galactosidase+3.2.1.23
123837alcohol dehydrogenase-1.1.1.1
123837gelatinase+
123837amylase+
123837DNase+
123837caseinase+3.4.21.50
123837catalase+1.11.1.6
123837tween esterase-
123837gamma-glutamyltransferase+2.3.2.2
123837lecithinase-
123837lipase+
123837lysine decarboxylase-4.1.1.18
123837ornithine decarboxylase+4.1.1.17
123837urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123837-+++-+-+++++---++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
123837+/----+/------++-----+/---+/-+/-+/-+/--+/-+/-+--+++/--+/-++--+/-------+/---

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123837++-+---+-++-------++--+--------+-+++-----+-------+------+++++--------++++--+--+-+-+-----++++-++----

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
7764vietnamese fish sauceJapanJPNAsia
67770Vietnamese fish sauce
123837Food, Fish, sauceJapanJPNAsia

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Food production
  • Cat3: #Food

taxonmaps

  • @ref: 69479
  • File name: preview.99_3166.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1652;97_1976;98_2430;99_3166&stattab=map
  • Last taxonomy: Bacillus
  • 16S sequence: AB099708
  • Sequence Identity:
  • Total samples: 2332
  • soil counts: 945
  • aquatic counts: 996
  • animal counts: 294
  • plant counts: 97

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
77641Risk group (German classification)
1238371Risk group (French classification)

Sequence information

16S sequences

  • @ref: 7764
  • description: Bacillus vietnamensis gene for 16S ribosomal RNA, partial sequence
  • accession: AB099708
  • length: 1388
  • database: ena
  • NCBI tax ID: 218284

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bacillus vietnamensis NBRC 1012371349757.3wgspatric1349757
66792Bacillus vietnamensis NBRC 1012372731957668draftimg1349757
67770Rossellomorea vietnamensis NBRC 101237GCA_001591825contigncbi1349757

GC content

@refGC-contentmethod
776443
3006243.5
6777043high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes88.927yes
gram-positiveyes89.438yes
anaerobicno98.053no
halophileyes62.844no
spore-formingyes95.963yes
glucose-utilyes91.719no
aerobicyes96.022yes
flagellatedyes86.865no
glucose-fermentno90.104no
thermophileno97.05no

External links

@ref: 7764

culture collection no.: DSM 18898, CIP 108672, HSCC 1663, JCM 11124, NRIC 0531, NRRL B-23890, BCRC 80102, LMG 24742, NBRC 101237

straininfo link

  • @ref: 70914
  • straininfo: 134413

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15545444Bacillus vietnamensis sp. nov., a moderately halotolerant, aerobic, endospore-forming bacterium isolated from Vietnamese fish sauce.Noguchi H, Uchino M, Shida O, Takano K, Nakamura LK, Komagata KInt J Syst Evol Microbiol10.1099/ijs.0.02895-02004Animals, Bacillus/*classification/cytology/*isolation & purification/physiology, Base Composition, Cell Wall/chemistry, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Diaminopimelic Acid/analysis/isolation & purification, Fatty Acids/analysis/isolation & purification, Fish Products/*microbiology, Fishes/microbiology, *Food Microbiology, Genes, rRNA, Gentian Violet, Hydrogen-Ion Concentration, Molecular Sequence Data, Phenazines, Phylogeny, Quinones/analysis/isolation & purification, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Saline Solution, Hypertonic, Seawater/*microbiology, Spores, Bacterial/cytology, Vietnam, Vitamin K 2/*analogs & derivatives/analysis/isolation & purification, Water MicrobiologyEnzymology
Phylogeny16902027Bacillus seohaeanensis sp. nov., a halotolerant bacterium that contains L-lysine in its cell wall.Lee JC, Lim JM, Park DJ, Jeon CO, Li WJ, Kim CJInt J Syst Evol Microbiol10.1099/ijs.0.64237-02006Bacillus/chemistry/*classification/isolation & purification/physiology, Base Composition, Cell Wall/chemistry, Culture Media, Cyanoacrylates/analysis, DNA, Bacterial/genetics, Fatty Acids/analysis, *Industrial Microbiology, Lysine/analysis/metabolism, Molecular Sequence Data, Peptidoglycan/analysis/metabolism, Phenotype, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Sodium Chloride, Species Specificity, Temperature, Vitamin K 2/analogs & derivativesCultivation
Phylogeny25100188Bacillus haikouensis sp. nov., a facultatively anaerobic halotolerant bacterium isolated from a paddy soil.Li J, Yang G, Lu Q, Zhao Y, Zhou SAntonie Van Leeuwenhoek10.1007/s10482-014-0248-72014Aerobiosis, Anaerobiosis, Bacillus/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Spores, Bacterial/cytology, Temperature, Vitamin K 2/analysisGenetics
Phylogeny30767851Bacillus salacetis sp. nov., a slightly halophilic bacterium from Thai shrimp paste (Ka-pi).Daroonpunt R, Yiamsombut S, Sitdhipol J, Tanasupawat SInt J Syst Evol Microbiol10.1099/ijsem.0.0032862019Bacillus/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Food Microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seafood/*microbiology, Sequence Analysis, DNA, Thailand, Vitamin K 2/analogs & derivatives/chemistryBiotechnology
Phylogeny34665118Rossellomorea arthrocnemi sp. nov., a novel plant growth-promoting bacterium used in heavy metal polluted soils as a phytoremediation tool.Navarro-Torre S, Carro L, Igual JM, Montero-Calasanz MDCInt J Syst Evol Microbiol10.1099/ijsem.0.0050152021Bacillaceae/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Biodegradation, Environmental, Chenopodiaceae/*microbiology, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Endophytes/classification/isolation & purification, Fatty Acids/chemistry, *Metals, Heavy, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, *Soil Pollutants, Spain, Vitamin K 2/analogs & derivatives/chemistryEnzymology

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
7764Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18898)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18898
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30062Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2642228776041
38287Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6326
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
70914Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID134413.1StrainInfo: A central database for resolving microbial strain identifiers
123837Curators of the CIPCollection of Institut Pasteur (CIP 108672)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108672