Strain identifier
BacDive ID: 12554
Type strain:
Species: Prevotella veroralis
Strain history: J. Watabe <-- T. Mitsuoka <-- W. E. C. Moore VPI D22A-7.
NCBI tax ID(s): 1122993 (strain), 28137 (species)
General
@ref: 8175
BacDive-ID: 12554
DSM-Number: 19559
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Prevotella veroralis DSM 19559 is an anaerobe, mesophilic bacterium that was isolated from human oral cavity.
NCBI tax id
NCBI tax id | Matching level |
---|---|
28137 | species |
1122993 | strain |
strain history
@ref | history |
---|---|
8175 | <- JCM/RIKEN <- J. Watabe <- T. Mitsuoka <- W. E. C. Moore; VPI D22A-7 |
67770 | J. Watabe <-- T. Mitsuoka <-- W. E. C. Moore VPI D22A-7. |
doi: 10.13145/bacdive12554.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Prevotellaceae
- genus: Prevotella
- species: Prevotella veroralis
- full scientific name: Prevotella veroralis (Watabe et al. 1983) Shah and Collins 1990
synonyms
- @ref: 20215
- synonym: Bacteroides veroralis
@ref: 8175
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Prevotellaceae
genus: Prevotella
species: Prevotella veroralis
full scientific name: Prevotella veroralis (Watabe et al. 1983) Shah and Collins 1990 emend. Wu et al. 1992
type strain: yes
Morphology
colony morphology
- @ref: 46252
- incubation period: 1-2 days
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
8175 | PYG MEDIUM (MODIFIED) (DSMZ Medium 104) | yes | https://mediadive.dsmz.de/medium/104 | Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water |
8175 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8175 | positive | growth | 37 | mesophilic |
46252 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
8175 | anaerobe |
46252 | anaerobe |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68367 | 27082 | trehalose | - | builds acid from |
68367 | 62345 | L-rhamnose | - | builds acid from |
68367 | 30911 | sorbitol | - | builds acid from |
68367 | 16634 | raffinose | + | builds acid from |
68367 | 6731 | melezitose | - | builds acid from |
68367 | 16024 | D-mannose | + | builds acid from |
68367 | 17057 | cellobiose | - | builds acid from |
68367 | 17754 | glycerol | - | builds acid from |
68367 | 4853 | esculin | + | hydrolysis |
68367 | 5291 | gelatin | - | hydrolysis |
68367 | 30849 | L-arabinose | - | builds acid from |
68367 | 65327 | D-xylose | - | builds acid from |
68367 | 17814 | salicin | - | builds acid from |
68367 | 17306 | maltose | + | builds acid from |
68367 | 17992 | sucrose | + | builds acid from |
68367 | 17716 | lactose | + | builds acid from |
68367 | 16899 | D-mannitol | - | builds acid from |
68367 | 17634 | D-glucose | + | builds acid from |
68367 | 16199 | urea | - | hydrolysis |
68367 | 27897 | tryptophan | - | energy source |
68380 | 16199 | urea | - | hydrolysis |
68380 | 29016 | arginine | - | hydrolysis |
68380 | 16024 | D-mannose | - | fermentation |
68380 | 16634 | raffinose | - | fermentation |
68380 | 29985 | L-glutamate | - | degradation |
68380 | 17632 | nitrate | - | reduction |
68380 | 27897 | tryptophan | - | energy source |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68367 | 35581 | indole | no |
68380 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | indole test |
---|---|---|---|
68380 | 35581 | indole | - |
68367 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68380 | serine arylamidase | - | |
68380 | glutamyl-glutamate arylamidase | - | |
68380 | histidine arylamidase | - | |
68380 | glycin arylamidase | - | |
68380 | alanine arylamidase | + | 3.4.11.2 |
68380 | tyrosine arylamidase | - | |
68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68380 | leucine arylamidase | - | 3.4.11.1 |
68380 | phenylalanine arylamidase | - | |
68380 | leucyl glycin arylamidase | + | 3.4.11.1 |
68380 | proline-arylamidase | - | 3.4.11.5 |
68380 | L-arginine arylamidase | - | |
68380 | alkaline phosphatase | + | 3.1.3.1 |
68380 | tryptophan deaminase | - | 4.1.99.1 |
68380 | alpha-fucosidase | - | 3.2.1.51 |
68380 | glutamate decarboxylase | - | 4.1.1.15 |
68380 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68380 | beta-glucuronidase | - | 3.2.1.31 |
68380 | alpha-arabinosidase | - | 3.2.1.55 |
68380 | beta-glucosidase | - | 3.2.1.21 |
68380 | alpha-glucosidase | + | 3.2.1.20 |
68380 | beta-Galactosidase 6-phosphate | + | |
68380 | beta-galactosidase | + | 3.2.1.23 |
68380 | alpha-galactosidase | - | 3.2.1.22 |
68380 | arginine dihydrolase | - | 3.5.3.6 |
68380 | urease | - | 3.5.1.5 |
68367 | beta-glucosidase | + | 3.2.1.21 |
68367 | gelatinase | - | |
68367 | urease | - | 3.5.1.5 |
API 20A
@ref | IND | URE | GLU | MAN | LAC | SAC | MAL | SAL | XYL | ARA | GEL | ESC | GLY | CEL | MNE | MLZ | RAF | SOR | RHA | TRE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
8175 | - | - | + | - | + | + | + | - | - | - | - | + | - | - | + | - | + | - | - | - |
API rID32A
@ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | NIT | IND | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
8175 | - | - | - | + | + | + | - | - | - | + | - | - | - | - | - | - | + | - | - | + | - | - | - | - | + | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
8175 | human oral cavity |
46252 | Human oral cavity |
67770 | Human oral cavity |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body-Site | #Oral cavity and airways | |
#Host Body-Site | #Oral cavity and airways | #Mouth |
Safety information
risk assessment
- @ref: 8175
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Prevotella veroralis gene for 16S ribosomal RNA, partial sequence, strain: JCM 6290 | AB547707 | 1492 | ena | 28137 |
20218 | Prevotella veroralis strain ATCC 33779 16S ribosomal RNA gene, partial sequence | AY836507 | 1453 | ena | 28137 |
20218 | Prevotella veroralis ATCC 33779 16S ribosomal RNA gene, complete sequence | L16473 | 1478 | ena | 28137 |
8175 | LI6473 | ena |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Prevotella veroralis DSM 19559 | 1122993.3 | wgs | patric | 1122993 |
66792 | Prevotella veroralis JCM 6290 | 1234673.5 | wgs | patric | 1122993 |
66792 | Prevotella veroralis JCM 6290 | 2585427910 | draft | img | 1122993 |
66792 | Prevotella veroralis DSM 19559 | 2517572238 | draft | img | 1122993 |
67770 | Prevotella veroralis DSM 19559 = JCM 6290 | GCA_000377625 | scaffold | ncbi | 1122993 |
67770 | Prevotella veroralis DSM 19559 = JCM 6290 | GCA_000613325 | contig | ncbi | 1122993 |
GC content
- @ref: 67770
- GC-content: 42.1
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 91.722 | no |
flagellated | no | 96.993 | no |
gram-positive | no | 97.076 | no |
anaerobic | yes | 98.356 | no |
aerobic | no | 98.07 | yes |
halophile | no | 81.435 | no |
spore-forming | no | 95.712 | no |
thermophile | no | 96.312 | yes |
glucose-util | yes | 86.274 | no |
glucose-ferment | yes | 58.59 | no |
External links
@ref: 8175
culture collection no.: DSM 19559, ATCC 33779, CCUG 15422, JCM 6290, VPI D22A-7, BCRC 14442
straininfo link
- @ref: 81769
- straininfo: 46766
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
8175 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19559) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19559 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
46252 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 15422) | https://www.ccug.se/strain?id=15422 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68367 | Automatically annotated from API 20A | |||||
68380 | Automatically annotated from API rID32A | |||||
81769 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID46766.1 | StrainInfo: A central database for resolving microbial strain identifiers |