Strain identifier

BacDive ID: 12554

Type strain: Yes

Species: Prevotella veroralis

Strain history: J. Watabe <-- T. Mitsuoka <-- W. E. C. Moore VPI D22A-7.

NCBI tax ID(s): 1122993 (strain), 28137 (species)

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General

@ref: 8175

BacDive-ID: 12554

DSM-Number: 19559

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative

description: Prevotella veroralis DSM 19559 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from human oral cavity.

NCBI tax id

NCBI tax idMatching level
1122993strain
28137species

strain history

@refhistory
8175<- JCM/RIKEN <- J. Watabe <- T. Mitsuoka <- W. E. C. Moore; VPI D22A-7
67770J. Watabe <-- T. Mitsuoka <-- W. E. C. Moore VPI D22A-7.

doi: 10.13145/bacdive12554.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Prevotellaceae
  • genus: Prevotella
  • species: Prevotella veroralis
  • full scientific name: Prevotella veroralis (Watabe et al. 1983) Shah and Collins 1990

  • synonyms

    • @ref: 20215
    • synonym: Bacteroides veroralis

@ref: 8175

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Prevotellaceae

genus: Prevotella

species: Prevotella veroralis

full scientific name: Prevotella veroralis (Watabe et al. 1983) Shah and Collins 1990 emend. Wu et al. 1992

type strain: yes

Morphology

cell morphology

@refgram stainconfidence
125438negative95.066
125439negative97.9

colony morphology

  • @ref: 46252
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8175PYG MEDIUM (MODIFIED) (DSMZ Medium 104)yeshttps://mediadive.dsmz.de/medium/104Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
8175COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperature
8175positivegrowth37
46252positivegrowth37
67770positivegrowth37

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
8175anaerobe
46252anaerobe
125438anaerobe92.105

spore formation

@refspore formationconfidence
125438no90.472
125439no98.4

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838017632nitrate-reduction
6838029985L-glutamate-degradation
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838027897tryptophan-energy source
6838029016arginine-hydrolysis
6838016199urea-hydrolysis
6836727082trehalose-builds acid from
6836762345L-rhamnose-builds acid from
6836730911sorbitol-builds acid from
6836716634raffinose+builds acid from
683676731melezitose-builds acid from
6836716024D-mannose+builds acid from
6836717057cellobiose-builds acid from
6836717754glycerol-builds acid from
683674853esculin+hydrolysis
683675291gelatin-hydrolysis
6836730849L-arabinose-builds acid from
6836765327D-xylose-builds acid from
6836717814salicin-builds acid from
6836717306maltose+builds acid from
6836717992sucrose+builds acid from
6836717716lactose+builds acid from
6836716899D-mannitol-builds acid from
6836717634D-glucose+builds acid from
6836716199urea-hydrolysis
6836727897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
6838035581indoleno
6836735581indoleno

metabolite tests

@refChebi-IDmetaboliteindole test
6838035581indole-
6836735581indole-

enzymes

@refvalueactivityec
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase-3.4.11.5
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380glutamate decarboxylase-4.1.1.15
68380urease-3.5.1.5
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380L-arginine arylamidase-
68380alpha-fucosidase-3.2.1.51
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate+
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68367beta-glucosidase+3.2.1.21
68367gelatinase-
68367urease-3.5.1.5

API 20A

@refINDUREGLUMANLACSACMALSALXYLARAGELESCGLYCELMNEMLZRAFSORRHATRE
8175--+-+++----+--+-+---

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
8175---+++---+------+--+----+----

Isolation, sampling and environmental information

isolation

@refsample type
8175human oral cavity
46252Human oral cavity
67770Human oral cavity

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Oral cavity and airways
#Host Body-Site#Oral cavity and airways#Mouth

Safety information

risk assessment

  • @ref: 8175
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Prevotella veroralis gene for 16S ribosomal RNA, partial sequence, strain: JCM 6290AB5477071492nuccore28137
20218Prevotella veroralis strain ATCC 33779 16S ribosomal RNA gene, partial sequenceAY8365071453nuccore28137
20218Prevotella veroralis ATCC 33779 16S ribosomal RNA gene, complete sequenceL164731478nuccore28137
8175LI6473ena

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Prevotella veroralis DSM 195591122993.3wgspatric1122993
66792Prevotella veroralis JCM 62901234673.5wgspatric1122993
66792Prevotella veroralis JCM 62902585427910draftimg1122993
66792Prevotella veroralis DSM 195592517572238draftimg1122993
67770Prevotella veroralis DSM 19559 = JCM 6290GCA_000377625scaffoldncbi1122993
67770Prevotella veroralis DSM 19559 = JCM 6290GCA_000613325contigncbi1122993

GC content

  • @ref: 67770
  • GC-content: 42.1
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthfacultative aerobe65.5
125439BacteriaNetgram_stainReaction to gram-stainingnegative97.9
125439BacteriaNetmotilityAbility to perform movementno74.6
125439BacteriaNetspore_formationAbility to form endo- or exosporesno98.4
125438gram-positivegram-positivePositive reaction to Gram-stainingno95.066no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)yes92.105yes
125438spore-formingspore-formingAbility to form endo- or exosporesno90.472no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no96.311no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno94.234yes
125438motile2+flagellatedAbility to perform flagellated movementno88.5no

External links

@ref: 8175

culture collection no.: DSM 19559, ATCC 33779, CCUG 15422, JCM 6290, VPI D22A-7, BCRC 14442

straininfo link

  • @ref: 81769
  • straininfo: 46766

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8175Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19559)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19559
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
46252Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 15422)https://www.ccug.se/strain?id=15422
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68367Automatically annotated from API 20A
68380Automatically annotated from API rID32A
81769Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID46766.1StrainInfo: A central database for resolving microbial strain identifiers
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1