Strain identifier

BacDive ID: 12551

Type strain: Yes

Species: Prevotella corporis

Strain Designation: N532-70A, N 532-70A

Strain history: CIP <- 1997, J.P. Carlier, Inst. Pasteur, Paris, France: strain AIP 10111 <- ATCC <- L.V. Holdeman: strain VPI 9342 <- D.W. Lambe Emory: strain N 532-70A

NCBI tax ID(s): 1122981 (strain), 28128 (species)

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General

@ref: 7711

BacDive-ID: 12551

DSM-Number: 18810

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Prevotella corporis N532-70A is an anaerobe, mesophilic bacterium that was isolated from cervical swab.

NCBI tax id

NCBI tax idMatching level
1122981strain
28128species

strain history

@refhistory
7711<- CIP; CIP 105107 <- J.-P. Carlier; AIP 10111 <- ATCC; ATCC 33547 <- L. V. Holdeman; VPI 9342 <- D. W. Lambe; N532-70A
67770Tama Biochem. Co., Ltd. <-- ATCC 33547 <-- L. V. Holdeman VPI 9342 <-- D. W. Lambe, Jr. strain Emory N532-70A.
118753CIP <- 1997, J.P. Carlier, Inst. Pasteur, Paris, France: strain AIP 10111 <- ATCC <- L.V. Holdeman: strain VPI 9342 <- D.W. Lambe Emory: strain N 532-70A

doi: 10.13145/bacdive12551.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Prevotellaceae
  • genus: Prevotella
  • species: Prevotella corporis
  • full scientific name: Prevotella corporis (Johnson and Holdeman 1983) Shah and Collins 1990

  • synonyms

    • @ref: 20215
    • synonym: Bacteroides corporis

@ref: 7711

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Prevotellaceae

genus: Prevotella

species: Prevotella corporis

full scientific name: Prevotella corporis (Johnson and Holdeman 1983) Shah and Collins 1990 emend. Hahnke et al. 2016

strain designation: N532-70A, N 532-70A

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no94.858
6948099.999negative
118753nonegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7711CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)yeshttps://mediadive.dsmz.de/medium/110Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
7711COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
39198MEDIUM 20 - for Anaerobic bacteriayesAgar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
118753CIP Medium 20yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20

culture temp

@refgrowthtypetemperaturerange
7711positivegrowth37mesophilic
39198positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
7711anaerobe
69480anaerobe98.876

spore formation

@refspore formationconfidence
69481no100
69480no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase+
68380alanine arylamidase+3.4.11.2
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
7711-----+----+-----++-++/-+-+/-++/-++-
7711-+---+----+-----++-+-+/---+-+/-+-

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
7711cervical swabUnited KingdomGBREurope
46244Cervical swab
67770Cervical swab
118753Cervical swab

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Infection#Patient#Swab
#Host#Human#Female
#Host Body-Site#Urogenital tract

taxonmaps

  • @ref: 69479
  • File name: preview.99_37474.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_295;96_4978;97_6024;98_27568;99_37474&stattab=map
  • Last taxonomy: Prevotella corporis subclade
  • 16S sequence: AB547677
  • Sequence Identity:
  • Total samples: 23573
  • soil counts: 154
  • aquatic counts: 241
  • animal counts: 23060
  • plant counts: 118

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
77112Risk group (German classification)
1187532Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Prevotella corporis gene for 16S ribosomal RNA, partial sequence, strain: JCM 8529AB5476771479ena28128
7711Prevotella corporis strain ATCC 33547 16S ribosomal RNA gene, partial sequenceL164651473ena28128

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Prevotella corporis DSM 188101122981.3wgspatric1122981
66792Prevotella corporis JCM 85291235812.3wgspatric1122981
66792Prevotella corporis DSM 188102523533623draftimg1122981
66792Prevotella corporis JCM 85292585427894draftimg1122981
67770Prevotella corporis DSM 18810 = JCM 8529GCA_000430525scaffoldncbi1122981
67770Prevotella corporis DSM 18810 = JCM 8529GCA_000613365contigncbi1122981

GC content

  • @ref: 7711
  • GC-content: 44.1
  • method: sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno93.922no
flagellatedno97.623no
gram-positiveno97.456no
anaerobicyes99.008yes
aerobicno98.582yes
halophileno86.518no
spore-formingno97.385no
glucose-utilyes79.84no
thermophileno96.534yes
glucose-fermentyes54.981no

External links

@ref: 7711

culture collection no.: DSM 18810, ATCC 33547, CIP 105107, JCM 8529, NCTC 13065, CCUG 15404, AIP 10111, VPI 9342, Lambe 532-70A, KCTC 15680

straininfo link

  • @ref: 81766
  • straininfo: 47019

literature

  • topic: Pathogenicity
  • Pubmed-ID: 2875705
  • title: An electron microscope survey of the surface structures and hydrophobicity of oral and non-oral species of the bacterial genus Bacteroides.
  • authors: Handley PS, Tipler LS
  • journal: Arch Oral Biol
  • DOI: 10.1016/0003-9969(86)90047-6
  • year: 1986
  • mesh: Bacteroides/classification/*ultrastructure, Fimbriae, Bacterial/ultrastructure, Humans, Microscopy, Electron, Surface Properties
  • topic2: Phylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7711Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18810)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18810
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39198Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17091
46244Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 15404)https://www.ccug.se/strain?id=15404
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
81766Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID47019.1StrainInfo: A central database for resolving microbial strain identifiers
118753Curators of the CIPCollection of Institut Pasteur (CIP 105107)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105107