Strain identifier

BacDive ID: 12541

Type strain: Yes

Species: Segatella baroniae

Strain Designation: E 9.33

Strain history: CCUG 50418 <-- J. Downes E9.33 <-- W. G. Wade E9.33.

NCBI tax ID(s): 1122980 (strain), 305719 (species)

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General

@ref: 6587

BacDive-ID: 12541

DSM-Number: 16972

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, ovoid-shaped

description: Segatella baroniae E 9.33 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from Human oral cavity, exodontic infection.

NCBI tax id

NCBI tax idMatching level
305719species
1122980strain

strain history

@refhistory
6587<- J. Downes <- W. Wade, strain E 9.33
67770CCUG 50418 <-- J. Downes E9.33 <-- W. G. Wade E9.33.

doi: 10.13145/bacdive12541.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Prevotellaceae
  • genus: Segatella
  • species: Segatella baroniae
  • full scientific name: Segatella baroniae (Downes et al. 2005) Hitch et al. 2023

  • synonyms

    • @ref: 20215
    • synonym: Prevotella baroniae

@ref: 6587

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Prevotellaceae

genus: Prevotella

species: Prevotella baroniae

full scientific name: Prevotella baroniae Downes et al. 2005 emend. Hahnke et al. 2016

strain designation: E 9.33

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31472negative1.3 µm0.6 µmovoid-shapedno
69480negative99.999

colony morphology

@refincubation period
65873-7 days
588592 days

pigmentation

  • @ref: 31472
  • production: no

Culture and growth conditions

culture medium

  • @ref: 6587
  • name: FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1203
  • composition: Name: FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203) Composition: Horse blood 100.0 g/l Fastidious Anaerobe Agar 45.7 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
6587positivegrowth35mesophilic
58859positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
6587anaerobe
31472anaerobe
58859anaerobe
69480anaerobe100

spore formation

@refspore formationconfidence
69481no100
69480no100

observation

  • @ref: 31472
  • observation: aggregates in clumps

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3147217057cellobiose+carbon source
3147228757fructose+carbon source
314725291gelatin+carbon source
3147217234glucose+carbon source
3147217716lactose+carbon source
3147217306maltose+carbon source
3147237684mannose+carbon source
3147216634raffinose+carbon source
3147217814salicin+carbon source
3147217992sucrose+carbon source
314724853esculin+hydrolysis
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
31472gelatinase+
68380serine arylamidase-
68380glutamyl-glutamate arylamidase+
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase+3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
6587--++-++--+---+--+--+----+--+-
6587--++-++--+---+--+--+----+-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
6587Human oral cavity, exodontic infectionLondonUnited KingdomGBREurope
58859Human oral cavity,endodontic infectionLondonUnited KingdomGBREurope2000-03-01
67770Human oral cavity

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Host#Human
#Host Body-Site#Oral cavity and airways#Tooth

taxonmaps

  • @ref: 69479
  • File name: preview.99_1442.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16272;96_830;97_969;98_1140;99_1442&stattab=map
  • Last taxonomy: Prevotella baroniae subclade
  • 16S sequence: FJ940882
  • Sequence Identity:
  • Total samples: 17285
  • soil counts: 346
  • aquatic counts: 205
  • animal counts: 16607
  • plant counts: 127

Safety information

risk assessment

  • @ref: 6587
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Prevotella baroniae strain DSM 16972 16S ribosomal RNA gene, partial sequenceFJ9408821455ena305719
6587Prevotella baroniae 16S ribosomal RNA gene, partial sequenceAY8405531455ena305719
67770Prevotella baroniae gene for 16S ribosomal RNA, partial sequence, strain: JCM 13447AB5476711494ena305719

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Prevotella baroniae DSM 169721122980.3wgspatric1122980
66792Prevotella baroniae JCM 134471235823.4wgspatric1122980
66792Prevotella baroniae JCM 134472585427893draftimg1122980
66792Prevotella baroniae DSM 169722526164515draftimg1122980
67770Prevotella baroniae DSM 16972 = JCM 13447GCA_000426585scaffoldncbi1122980
67770Prevotella baroniae DSM 16972 = JCM 13447GCA_000613565contigncbi1122980

GC content

@refGC-contentmethod
658752high performance liquid chromatography (HPLC)
3147252
658753.0sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno92.348no
flagellatedno96.618yes
gram-positiveno96.694yes
anaerobicyes98.242yes
aerobicno98.026no
halophileno81.404no
spore-formingno96.002no
glucose-utilyes84.777yes
thermophileno96.438yes
glucose-fermentyes63.117no

External links

@ref: 6587

culture collection no.: DSM 16972, CCUG 50418, JCM 13447

straininfo link

  • @ref: 81758
  • straininfo: 215260

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16014480Prevotella marshii sp. nov. and Prevotella baroniae sp. nov., isolated from the human oral cavity.Downes J, Sutcliffe I, Tanner ACR, Wade WGInt J Syst Evol Microbiol10.1099/ijs.0.63634-02005Bacterial Typing Techniques, Bacteroidaceae Infections/*microbiology, DNA, Bacterial/analysis, DNA, Ribosomal, Genes, rRNA, Humans, Molecular Sequence Data, Mouth/*microbiology, Nucleic Acid Hybridization, Phenotype, Phylogeny, Prevotella/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S, Sequence Analysis, DNA, Species SpecificityPathogenicity
Pathogenicity19805556Metronidazole resistance in Prevotella spp. and description of a new nim gene in Prevotella baroniae.Alauzet C, Mory F, Teyssier C, Hallage H, Carlier JP, Grollier G, Lozniewski AAntimicrob Agents Chemother10.1128/AAC.01003-092009Anti-Bacterial Agents/*pharmacology, Bacteroidaceae Infections/epidemiology/microbiology, Blotting, Southern, Cross Infection, DNA, Bacterial/genetics, Drug Resistance, Bacterial/*genetics, Genes, Bacterial/genetics, Humans, Metronidazole/*pharmacology, Microbial Sensitivity Tests, Plasmids/genetics, Prevotella/*drug effects/*genetics, RNA, Ribosomal, 16S/genetics, Reverse Transcriptase Polymerase Chain ReactionPhylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
6587Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16972)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16972
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
31472Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604127772
58859Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 50418)https://www.ccug.se/strain?id=50418
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
81758Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID215260.1StrainInfo: A central database for resolving microbial strain identifiers