Strain identifier
BacDive ID: 12537
Type strain:
Species: Prevotella nigrescens
Strain history: CIP <- 2001, CCUG <- 1980, NCTC <- 1954, L.P. Garrod, London, UK
NCBI tax ID(s): 997352 (strain), 28133 (species)
General
@ref: 5019
BacDive-ID: 12537
DSM-Number: 13386
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, rod-shaped
description: Prevotella nigrescens DSM 13386 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from Vincent's gingivitis.
NCBI tax id
NCBI tax id | Matching level |
---|---|
997352 | strain |
28133 | species |
strain history
@ref | history |
---|---|
5019 | <- ATCC; ATCC 33563 <- VPI; VPI 8944 (Bacteroides intermedius) <- NCTC; NCTC 9336 <- M. E. Sharpe; <- L.P. Garrod; Lambe 729-74 |
67770 | CCUG 9560 <-- NCTC 9336 <-- L. P. Garrod. |
67770 | Y. Benno <-- T. Mitsuoka <-- NCTC 9336 <-- L. P. Garrod. |
121297 | CIP <- 2001, CCUG <- 1980, NCTC <- 1954, L.P. Garrod, London, UK |
doi: 10.13145/bacdive12537.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Prevotellaceae
- genus: Prevotella
- species: Prevotella nigrescens
- full scientific name: Prevotella nigrescens Shah and Gharbia 1992
synonyms
- @ref: 20215
- synonym: Prevotella nigrescens
@ref: 5019
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Prevotellaceae
genus: Prevotella
species: Prevotella nigrescens
full scientific name: Prevotella nigrescens Shah and Gharbia 1992 emend. Hahnke et al. 2016
type strain: yes
Morphology
cell morphology
- @ref: 121297
- gram stain: negative
- cell shape: rod-shaped
- motility: no
colony morphology
@ref | incubation period |
---|---|
5019 | 1-2 days |
45196 | 2 days |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
5019 | CHOPPED MEAT MEDIUM (DSMZ Medium 78) | yes | https://mediadive.dsmz.de/medium/78 | Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water |
5019 | PYG MEDIUM (MODIFIED) (DSMZ Medium 104) | yes | https://mediadive.dsmz.de/medium/104 | Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water |
39314 | MEDIUM 20 - for Anaerobic bacteria | yes | Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml) | |
5019 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
121297 | CIP Medium 20 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
5019 | positive | growth | 37 | mesophilic |
39314 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
5019 | anaerobe |
45196 | anaerobe |
121297 | anaerobe |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
121297 | 17632 | nitrate | - | reduction |
121297 | 16301 | nitrite | - | reduction |
68380 | 16199 | urea | - | hydrolysis |
68380 | 16024 | D-mannose | - | fermentation |
68380 | 29985 | L-glutamate | - | degradation |
68380 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 121297
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
68380 | serine arylamidase | - | |
68380 | glutamyl-glutamate arylamidase | + | |
68380 | alanine arylamidase | + | 3.4.11.2 |
68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68380 | leucine arylamidase | - | 3.4.11.1 |
68380 | leucyl glycin arylamidase | + | 3.4.11.1 |
68380 | proline-arylamidase | - | 3.4.11.5 |
68380 | alkaline phosphatase | + | 3.1.3.1 |
68380 | glutamate decarboxylase | - | 4.1.1.15 |
68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68380 | beta-glucuronidase | - | 3.2.1.31 |
68380 | alpha-arabinosidase | - | 3.2.1.55 |
68380 | beta-glucosidase | - | 3.2.1.21 |
68380 | alpha-glucosidase | + | 3.2.1.20 |
68380 | beta-Galactosidase 6-phosphate | - | |
68380 | beta-galactosidase | - | 3.2.1.23 |
68380 | alpha-galactosidase | - | 3.2.1.22 |
68380 | urease | - | 3.5.1.5 |
121297 | oxidase | - | |
121297 | catalase | - | 1.11.1.6 |
121297 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | - | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121297 | - | + | - | - | - | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - |
API rID32A
@ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | NIT | IND | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
5019 | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | + | + | + | - | + | +/- | - | - | +/- | + | +/- | +/- | + | - |
45196 | - | - | - | - | - | + | - | - | - | - | - | - | - | + | - | + | + | + | - | + | - | - | - | - | + | - | - | + | - |
5019 | - | +/- | - | - | + | - | - | - | - | - | - | - | + | - | + | + | +/- | - | + | - | - | - | - | + | - | - | + | - | |
5019 | - | - | - | - | - | + | - | - | - | - | - | +/- | - | + | - | +/- | + | + | - | + | - | - | - | - | + | - | - | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | continent | geographic location | country | origin.country | isolation date |
---|---|---|---|---|---|---|
5019 | Vincent's gingivitis | Europe | ||||
45196 | Human gingivitis | Europe | London | United Kingdom | GBR | |
67770 | Human gingival crevice | |||||
121297 | Human, Gingivitis | Europe | London | United Kingdom | GBR | 1954 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Disease | |
#Host Body-Site | #Oral cavity and airways | #Gingiva |
taxonmaps
- @ref: 69479
- File name: preview.99_7460.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_295;96_3484;97_4271;98_5467;99_7460&stattab=map
- Last taxonomy: Prevotella nigrescens subclade
- 16S sequence: X73963
- Sequence Identity:
- Total samples: 75740
- soil counts: 1204
- aquatic counts: 1593
- animal counts: 72425
- plant counts: 518
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
5019 | 2 | Risk group (German classification) |
121297 | 2 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Prevotella nigrescens strain ATCC 33563 16S ribosomal RNA gene, partial sequence | AF414833 | 1363 | ena | 997352 |
20218 | Prevotella nigrescens ATCC 33563 16S ribosomal RNA gene, complete sequence | L16471 | 1471 | ena | 28133 |
20218 | P.nigrescens gene for 16S rRNA | X73963 | 1453 | ena | 997352 |
5019 | Prevotella nigrescens gene for 16S ribosomal RNA, partial sequence, strain: JCM 12250 | AB547696 | 1280 | ena | 997352 |
67770 | Prevotella nigrescens gene for 16S ribosomal RNA, partial sequence, strain: JCM 6322 | AB547697 | 1480 | ena | 28133 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Prevotella nigrescens NCTC9336 | GCA_900454985 | contig | ncbi | 28133 |
66792 | Prevotella nigrescens ATCC 33563 | GCA_000220235 | scaffold | ncbi | 997352 |
66792 | Prevotella nigrescens ATCC 33563 | 997352.4 | wgs | patric | 997352 |
66792 | Prevotella nigrescens strain FDAARGOS_1486 | 28133.93 | complete | patric | 28133 |
66792 | Prevotella nigrescens strain NCTC9336 | 28133.4 | wgs | patric | 28133 |
66792 | Prevotella nigrescens NCTC 9336 | 2811995243 | draft | img | 28133 |
66792 | Prevotella nigrescens ATCC 33563 | 651324089 | draft | img | 997352 |
66792 | Prevotella nigrescens strain FDAARGOS_1486 | 28133.99 | complete | patric | 28133 |
66792 | Prevotella nigrescens strain FDAARGOS_1486 | 28133.103 | complete | patric | 28133 |
66792 | Prevotella nigrescens strain FDAARGOS_1486 | 28133.95 | complete | patric | 28133 |
GC content
@ref | GC-content | method |
---|---|---|
5019 | 42.5 | thermal denaturation, midpoint method (Tm) |
5019 | 42.6 | sequence analysis |
67770 | 42.5 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 92.805 | no |
gram-positive | no | 97.25 | no |
anaerobic | yes | 98.989 | yes |
halophile | no | 83.491 | no |
spore-forming | no | 95.76 | no |
glucose-util | yes | 81.234 | no |
flagellated | no | 97.181 | no |
aerobic | no | 98.459 | yes |
thermophile | no | 96.977 | yes |
glucose-ferment | yes | 53.991 | no |
External links
@ref: 5019
culture collection no.: DSM 13386, ATCC 33563, NCTC 9336, CCUG 9560, CIP 105552, JCM 12250, VPI 8944, Lambe 729-74, CIP 104835, JCM 6322, KCTC 15081
straininfo link
- @ref: 81754
- straininfo: 40561
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 1390107 | Biochemical and chemical studies on strains designated Prevotella intermedia and proposal of a new pigmented species, Prevotella nigrescens sp. nov. | Shah HN, Gharbia SE | Int J Syst Bacteriol | 10.1099/00207713-42-4-542 | 1992 | Bacterial Typing Techniques, Bacteroides/*classification/genetics/metabolism, Cellobiose/metabolism, Culture Media, DNA, Bacterial/chemistry, Fermentation, Nucleic Acid Hybridization, Phenotype, Pigmentation, Xylans/metabolism | Metabolism |
Metabolism | 7567062 | Characterization of immunoglobulin G-degrading proteases of Prevotella intermedia and Prevotella nigrescens. | Jansen HJ, Grenier D, Van der Hoeven JS | Oral Microbiol Immunol | 10.1111/j.1399-302x.1995.tb00134.x | 1995 | Animals, Antibodies, Bacterial/*metabolism, Bacterial Proteins/chemistry/*metabolism, Cattle, Cysteine Endopeptidases/chemistry/metabolism, Dogs, Electrophoresis, Polyacrylamide Gel, Humans, Hydrogen-Ion Concentration, Hydrolysis, Immunoglobulin A/metabolism, Immunoglobulin G/*metabolism, Immunoglobulin M/metabolism, Molecular Weight, Peptide Hydrolases/chemistry/*metabolism, Prevotella/*enzymology/immunology, Prevotella intermedia/enzymology/immunology, Protease Inhibitors/metabolism, Serine Endopeptidases/chemistry/metabolism, Time Factors | Enzymology |
Metabolism | 9171510 | Hydrolytic and depolymerising enzyme activity of Prevotella intermedia and Prevotella nigrescens. | Stubbs S, Lewis MA, Waddington RJ, Embery G | Oral Dis | 10.1111/j.1601-0825.1996.tb00237.x | 1996 | Alkaline Phosphatase/metabolism, Chymotrypsin/metabolism, Dipeptidyl-Peptidases and Tripeptidyl-Peptidases/metabolism, Glycosaminoglycans/metabolism, Hot Temperature, Hydrolases/*metabolism, Lipase/metabolism, Periodontal Diseases/microbiology, Porphyromonas gingivalis/enzymology, Prevotella/*enzymology, Prevotella intermedia/enzymology, Species Specificity, Virulence | Enzymology |
Metabolism | 9345789 | Fermentation product analysis in the identification of black-pigmented bacteria from periodontitis. | Takada K, Hirasawa M | Microbios | 1997 | Antibodies, Bacterial/analysis/immunology, Antigens, Bacterial/analysis/immunology, Bacteriological Techniques, Chromatography, Gas, Culture Media/*analysis/metabolism, Electrophoresis, Polyacrylamide Gel, Fatty Acids/*analysis/metabolism, Fermentation, Gram-Negative Anaerobic Bacteria/growth & development/immunology/*metabolism, Humans, Immunodiffusion, Periodontitis/*microbiology | Enzymology | |
Phylogeny | 9542074 | Biochemical and genetic characterization of a Prevotella intermedia/nigrescens-like organism. | Kononen E, Matto J, Vaisanen-Tunkelrott ML, Frandsen EV, Helander I, Asikainen S, Finegold SM, Jousimies-Somer H | Int J Syst Bacteriol | 10.1099/00207713-48-1-39 | 1998 | Bacterial Proteins/analysis, Classification, DNA, Bacterial/analysis, Electrophoresis, Genetic Heterogeneity, Glutamate Dehydrogenase/analysis, Immunoglobulin A/metabolism, Malate Dehydrogenase/analysis, Oligonucleotide Probes, Polymerase Chain Reaction, Prevotella intermedia/classification/*enzymology/*genetics, Species Specificity, beta-Lactamases/metabolism | Enzymology |
Pathogenicity | 9641142 | In vitro adhesion of two strains of Prevotella nigrescens to the dentin of the root canal: the part played by different irrigation solutions. | Calas P, Rochd T, Druilhet P, Azais JM | J Endod | 10.1016/S0099-2399(98)80088-5 | 1998 | Animals, Bacterial Adhesion/*drug effects, Cattle, Citric Acid/pharmacology, Dental Pulp Cavity/microbiology, Dentin/*drug effects/ultrastructure, Microscopy, Electron, Scanning, Prevotella/*physiology, Root Canal Irrigants/*pharmacology, Smear Layer, Sodium Hypochlorite/pharmacology | |
Phylogeny | 10074526 | Use of PCR and sodium dodecyl sulfate-polyacrylamide gel electrophoresis techniques for differentiation of Prevotella intermedia sensu stricto and Prevotella nigrescens. | Premaraj T, Kato N, Fukui K, Kato H, Watanabe K | J Clin Microbiol | 10.1128/JCM.37.4.1057-1061.1999 | 1999 | *Bacterial Typing Techniques, Base Sequence, DNA Primers/genetics, Electrophoresis, Polyacrylamide Gel/*methods, Evaluation Studies as Topic, Humans, Polymerase Chain Reaction/*methods, Prevotella/*classification/*genetics/isolation & purification, Prevotella intermedia/*classification/*genetics/isolation & purification, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Reproducibility of Results, Sodium Dodecyl Sulfate, Species Specificity | Enzymology |
Phylogeny | 10635221 | Survey for collagenase gene prtC in Porphyromonas gingivalis and Porphyromonas endodontalis isolated from endodontic infections. | Odell LJ, Baumgartner JC, Xia T, David LL | J Endod | 10.1016/S0099-2399(99)80379-3 | 1999 | *Bacterial Proteins, Bacterial Typing Techniques, Bacteroidaceae Infections/microbiology, Collagenases/*genetics, DNA, Bacterial/genetics, Dental Pulp Cavity/microbiology, Dental Pulp Diseases/*microbiology, *Genes, Bacterial, Humans, Microbial Collagenase/*genetics, Polymerase Chain Reaction, Polymorphism, Restriction Fragment Length, Porphyromonas/classification/*enzymology/*genetics, Porphyromonas gingivalis/classification/enzymology/genetics, RNA, Ribosomal, 16S/genetics | Pathogenicity |
Pathogenicity | 11938715 | In vitro effect of intracanal medicaments on strict anaerobes by means of the broth dilution method. | Rosa OP, Torres SA, Ferreira CM, Ferreira FB | Pesqui Odontol Bras | 10.1590/s1517-74912002000100006 | 2002 | Bacteria, Anaerobic/*drug effects, Indicator Dilution Techniques, Reproducibility of Results, Root Canal Therapy/*methods, Therapeutic Irrigation | |
Pathogenicity | 12067123 | Scanning electron microscopy study of the adhesion of Prevotella nigrescens to the dentin of prepared root canals. | Yang SE, Bae KS | J Endod | 10.1097/00004770-200206000-00004 | 2002 | Analysis of Variance, *Bacterial Adhesion, Bacteroidaceae Infections/microbiology, Dental Pulp Cavity/*microbiology/ultrastructure, Dentin/*microbiology/ultrastructure, Humans, Microscopy, Electron, Scanning, Prevotella/*physiology, Recurrence, Root Canal Preparation, *Smear Layer | |
Pathogenicity | 12238802 | Activity of endodontic antibacterial agents against selected anaerobic bacteria. | Ferreira CM, da Silva Rosa OP, Torres SA, Ferreira FB, Bernardinelli N | Braz Dent J | 10.1590/s0103-64402002000200008 | 2002 | Bacteria, Anaerobic/*drug effects, Bacteroides fragilis/drug effects, Calcium Hydroxide/pharmacology, Camphor/pharmacology, Castor Oil/pharmacology, Chlorhexidine/*analogs & derivatives/pharmacology, Chlorophenols/pharmacology, Clostridium perfringens/drug effects, Culture Media, Detergents/pharmacology, Disinfectants/*pharmacology, Drug Combinations, Fusobacterium nucleatum/drug effects, Humans, Microbial Sensitivity Tests, Prevotella/drug effects, Root Canal Irrigants/*pharmacology, Spectrophotometry | Cultivation |
12540214 | Bacterial concentrations determine the ability to implant in the root canal system and translocate to lymph nodes in germ-free mice. | de Melo Maltos SM, Ribeiro Sobrinho AP, Silva FV, Nicoli JR, Roque de Carvalho MA, Vieira LQ, de Macedo Farias L | J Endod | 10.1097/00004770-200301000-00007 | 2003 | Animals, Bacterial Translocation/*physiology, Colony Count, Microbial, Dental Pulp Cavity/*microbiology, Enterococcus faecalis/*physiology, Female, Germ-Free Life, Lymph Nodes/*microbiology, Male, Mice, Neck, Prevotella/*physiology | ||
Metabolism | 14759706 | In vitro activation of the hemolysin in Prevotella nigrescens ATCC 33563 and Prevotella intermedia ATCC 25611. | Silva TA, Noronha FS, de Macedo Farias L, Carvalho MA | Res Microbiol | 10.1016/j.resmic.2003.09.010 | 2004 | Animals, Edetic Acid/pharmacology, Endopeptidase K/metabolism, Endopeptidases/metabolism, Enzyme Activation, Enzyme Inhibitors/pharmacology, Enzyme Stability, Hemolysin Proteins/*metabolism, *Hemolysis, Humans, Hydrogen-Ion Concentration, Kinetics, Leucine/*analogs & derivatives/pharmacology, Pepstatins/pharmacology, Phenylmethylsulfonyl Fluoride/pharmacology, Prevotella intermedia/growth & development/*metabolism, Prevotella nigrescens/growth & development/*metabolism, Rabbits, Temperature, Tosyllysine Chloromethyl Ketone/pharmacology, Trypsin/metabolism | Enzymology |
Phylogeny | 19196771 | Prevotella falsenii sp. nov., a Prevotella intermedia-like organism isolated from monkey dental plaque. | Sakamoto M, Kumada H, Hamada N, Takahashi Y, Okamoto M, Bakir MA, Benno Y | Int J Syst Evol Microbiol | 10.1099/ijs.0.002626-0 | 2009 | Animals, Dental Plaque/*microbiology, Fatty Acids/analysis, Macaca fascicularis/*microbiology, Molecular Sequence Data, Phylogeny, Prevotella/chemistry/*classification/genetics, RNA, Ribosomal, 16S/genetics, Species Specificity | Genetics |
Phylogeny | 19654360 | Prevotella aurantiaca sp. nov., isolated from the human oral cavity. | Sakamoto M, Suzuki N, Okamoto M | Int J Syst Evol Microbiol | 10.1099/ijs.0.012831-0 | 2009 | DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Humans, Molecular Sequence Data, Mouth/*microbiology, Periodontitis/microbiology, Phylogeny, Prevotella/*classification/genetics/*isolation & purification/metabolism, RNA, Ribosomal, 16S/genetics | Metabolism |
Pathogenicity | 21184839 | Development of Prevotella nigrescens-specific PCR primers based on the nucleotide sequence of a Pn23 DNA probe. | Kim MJ, Lee YS, Park JY, Kook JK | Anaerobe | 10.1016/j.anaerobe.2010.12.005 | 2010 | Bacteriological Techniques/*methods, Base Sequence, Blotting, Southern, DNA Primers/genetics, DNA, Bacterial/*genetics, Gram-Negative Bacterial Infections/diagnosis, Humans, Oligonucleotide Probes, Polymerase Chain Reaction/*methods, Prevotella intermedia/genetics, Prevotella nigrescens/*genetics/isolation & purification, Sensitivity and Specificity | Enzymology |
Pathogenicity | 24594108 | Effect of estradiol on planktonic growth, coaggregation, and biofilm formation of the Prevotella intermedia group bacteria. | Fteita D, Kononen E, Soderling E, Gursoy UK | Anaerobe | 10.1016/j.anaerobe.2014.02.003 | 2014 | Adult, Bacteria, Bacterial Adhesion/*drug effects, Biofilms/*drug effects/*growth & development, Colony Count, Microbial, Estradiol/*pharmacology, Estrogens/*pharmacology, Female, Fusobacterium nucleatum/physiology, Humans, Male, Middle Aged, Polysaccharides, Bacterial/metabolism, Pregnancy, Prevotella/*drug effects/growth & development/*physiology, Proteins/analysis, Spectrophotometry | Metabolism |
Pathogenicity | 26406499 | Intraspecies Variability Affects Heterotypic Biofilms of Porphyromonas gingivalis and Prevotella intermedia: Evidences of Strain-Dependence Biofilm Modulation by Physical Contact and by Released Soluble Factors. | Barbosa GM, Colombo AV, Rodrigues PH, Simionato MR | PLoS One | 10.1371/journal.pone.0138687 | 2015 | Bacterial Adhesion, Biofilms/*growth & development, Biomass, Dysbiosis/microbiology, Humans, Periodontitis/microbiology, Porphyromonas gingivalis/classification/*physiology, Prevotella intermedia/classification/genetics/*physiology | Phylogeny |
Enzymology | 27118478 | Copaifera reticulata oleoresin: Chemical characterization and antibacterial properties against oral pathogens. | Bardaji DK, da Silva JJ, Bianchi TC, de Souza Eugenio D, de Oliveira PF, Leandro LF, Rogez HL, Venezianni RC, Ambrosio SR, Tavares DC, Bastos JK, Martins CH | Anaerobe | 10.1016/j.anaerobe.2016.04.017 | 2016 | Anti-Bacterial Agents/chemistry/isolation & purification/*pharmacology, Bridged Bicyclo Compounds/isolation & purification, Cell Line, Cell Survival/drug effects, Dental Caries/microbiology, Fabaceae/*chemistry, Fibroblasts/cytology/drug effects, Humans, Lactobacillus casei/drug effects/growth & development/isolation & purification, Microbial Sensitivity Tests, Monocyclic Sesquiterpenes, Periodontitis/microbiology, Plant Extracts/chemistry/isolation & purification/*pharmacology, Porphyromonas gingivalis/*drug effects/growth & development/isolation & purification, Prevotella nigrescens/*drug effects/growth & development/isolation & purification, Sesquiterpenes/isolation & purification, Streptococcus mutans/drug effects/growth & development/isolation & purification, Streptococcus salivarius/drug effects/growth & development/isolation & purification, Terpenes/isolation & purification | Phylogeny |
Pathogenicity | 28627377 | Mikania glomerata Sprengel extract and its major compound ent-kaurenoic acid display activity against bacteria present in endodontic infections. | Moreti DLC, Leandro LF, da Silva Moraes T, Moreira MR, Sola Veneziani RC, Ambrosio SR, Gomes BP, Martins CHG | Anaerobe | 10.1016/j.anaerobe.2017.06.008 | 2017 | Anti-Bacterial Agents/isolation & purification/*pharmacology, Bacteria/*drug effects/isolation & purification, Bacterial Infections/*microbiology, Biofilms/drug effects, Brazil, Chlorhexidine/pharmacology, Diterpenes/isolation & purification/*pharmacology, Drug Synergism, Humans, Microbial Sensitivity Tests, Microbial Viability/drug effects, Mikania/*chemistry, Plant Extracts/isolation & purification/*pharmacology, Pulpitis/*microbiology | Enzymology |
Pathogenicity | 30189320 | Quorum sensing molecules regulate epithelial cytokine response and biofilm-related virulence of three Prevotella species. | Fteita D, Kononen E, Gursoy M, Ma X, Sintim HO, Gursoy UK | Anaerobe | 10.1016/j.anaerobe.2018.09.001 | 2018 | Bacteroidaceae Infections/genetics/*immunology/microbiology, Biofilms, Epithelial Cells/*immunology/microbiology, Gingiva/*immunology/microbiology, Humans, Interleukin-1beta/genetics/*immunology, Interleukin-6/genetics/*immunology, Interleukin-8/genetics/*immunology, Keratinocytes/immunology/microbiology, Prevotella/classification/genetics/pathogenicity/*physiology, Prevotella intermedia/genetics/pathogenicity/physiology, Prevotella nigrescens/genetics/pathogenicity/physiology, *Quorum Sensing | Phylogeny |
35618163 | Chalcones with potential antibacterial and antibiofilm activities against periodontopathogenic bacteria. | Satokata AAC, Souza JH, Silva LLO, Santiago MB, Ramos SB, Assis LR, Theodoro RDS, Oliveira LRE, Regasini LO, Martins CHG | Anaerobe | 10.1016/j.anaerobe.2022.102588 | 2022 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
5019 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13386) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-13386 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
39314 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17584 | ||||
45196 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 9560) | https://www.ccug.se/strain?id=9560 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68380 | Automatically annotated from API rID32A | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
81754 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID40561.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
121297 | Curators of the CIP | Collection of Institut Pasteur (CIP 105552) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105552 |