Strain identifier

BacDive ID: 12517

Type strain: Yes

Species: Dysgonomonas mossii

Strain history: CIP <- 2001, CCUG -> R.S. Weyant, CDC, Atlanta, USA <- Michigan, USA

NCBI tax ID(s): 742767 (strain), 163665 (species)

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General

@ref: 16541

BacDive-ID: 12517

DSM-Number: 22836

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, rod-shaped, human pathogen

description: Dysgonomonas mossii DSM 22836 is an anaerobe, mesophilic, rod-shaped human pathogen that was isolated from human, abdominal drainage.

NCBI tax id

NCBI tax idMatching level
163665species
742767strain

strain history

@refhistory
16541<- CIP; CIP 107079 <- CCUG <- R. S. Weyant, CDC
67770CCUG 43457 <-- CDC F9489.
121148CIP <- 2001, CCUG -> R.S. Weyant, CDC, Atlanta, USA <- Michigan, USA

doi: 10.13145/bacdive12517.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Dysgonomonadaceae
  • genus: Dysgonomonas
  • species: Dysgonomonas mossii
  • full scientific name: Dysgonomonas mossii Lawson et al. 2002

@ref: 16541

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Dysgonomonadaceae

genus: Dysgonomonas

species: Dysgonomonas mossii

full scientific name: Dysgonomonas mossii Lawson et al. 2002 emend. Hahnke et al. 2016

type strain: yes

Morphology

cell morphology

@refcell shapegram stainmotilityconfidence
68367rod-shaped
68367negative
69480no90.013
69480negative99.997
121148rod-shapednegativeno

colony morphology

  • @ref: 121148

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16541PYG MEDIUM (MODIFIED) (DSMZ Medium 104)yeshttps://mediadive.dsmz.de/medium/104Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
16541COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
33044MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
121148CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
16541positivegrowth37mesophilic
33044positivegrowth37mesophilic
55874positivegrowth37mesophilic
67770positivegrowth37mesophilic
121148positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
16541anaerobe
55874anaerobe
55874microaerophile
69480anaerobe99.473
121148anaerobe

spore formation

@refspore formationconfidence
68367no
69481no100
69480no99.997

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836727082trehalose+builds acid from
6836716634raffinose+builds acid from
6836716024D-mannose+builds acid from
6836717057cellobiose+builds acid from
683674853esculin+hydrolysis
683675291gelatin-hydrolysis
6836765327D-xylose+builds acid from
6836717814salicin+builds acid from
6836717306maltose+builds acid from
6836717992sucrose+builds acid from
6836717716lactose+builds acid from
6836717634D-glucose+builds acid from
6836716199urea-hydrolysis
6836727897tryptophan+energy source
12114817634D-glucose+degradation
12114865327D-xylose+degradation
12114817057cellobiose+degradation
12114817716lactose+degradation
12114817306maltose+degradation
12114817814salicin+degradation
12114817992sucrose+degradation
1211484853esculin+hydrolysis
12114817632nitrate-reduction
12114816301nitrite-reduction
12114817632nitrate+respiration
6837717634D-glucose+builds acid from
6837715824D-fructose+builds acid from
6837717306maltose+builds acid from
6837718257ornithine-degradation
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose+fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

antibiotic resistance

  • @ref: 121148
  • ChEBI: 6909
  • metabolite: metronidazole
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836735581indoleyes
12114835581indoleyes
6838035581indoleno

metabolite tests

@refChebi-IDmetaboliteindole test
6838035581indole-
6836735581indole+

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase+
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68377proline-arylamidase-3.4.11.5
68377alkaline phosphatase+3.1.3.1
68377lipase+
68377ornithine decarboxylase-4.1.1.17
68367beta-glucosidase+3.2.1.21
68367gelatinase-
68367urease-3.5.1.5
121148oxidase-
121148beta-galactosidase-3.2.1.23
121148gelatinase-
121148amylase+
121148DNase-
121148caseinase-3.4.21.50
121148catalase-1.11.1.6
121148tween esterase-
121148lecithinase-
121148lipase-
121148protease-
121148urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
55874-+-+-----+++++-+++--
121148-+++-----+++++-+++--

API 20A

@refINDUREGLUMANLACSACMALSALXYLARAGELESCGLYCELMNEMLZRAFSORRHATRESPORGRAMCOCC
16541+-++/-++++++/--++/-+++/-++/-+/-+---

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
55874-++++--+++---
16541++++--+++--+-
16541-++++--+++--+

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
16541--+++/-++--++----+--+----+--+-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
16541human, abdominal drainageMichigan, Detroit, Holy Cross HospitalUSAUSANorth America
55874Human abdominal drainage,68-yr-old femaleMichigan,DetroitUSAUSANorth America1987
67770Human clinical source
121148Human, Abdominal drainageMichiganUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Other#Abdomen

taxonmaps

  • @ref: 69479
  • File name: preview.99_3383.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_77;96_1763;97_2111;98_2591;99_3383&stattab=map
  • Last taxonomy: Dysgonomonas
  • 16S sequence: AJ319867
  • Sequence Identity:
  • Total samples: 12203
  • soil counts: 933
  • aquatic counts: 5965
  • animal counts: 4917
  • plant counts: 388

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
16541yes, in single cases1Risk group (German classification)
1211481Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Dysgonomonas mossii 16S-23S ribosomal RNA intergenic spacer, partial sequence; and tRNA-Ile and tRNA-Ala genes, complete sequenceAY704410559ena742767
16541Dysgonomonas mossii partial 16S rRNA gene, type strain CCUG 43457TAJ3198671451ena742767
67770Dysgonomonas mossii gene for 16S ribosomal RNA, partial sequence, strin: JCM 16699AB5486761488ena742767

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Dysgonomonas mossii DSM 22836742767.5wgspatric742767
66792Dysgonomonas mossii DSM 22836742767.3wgspatric742767
66792Dysgonomonas mossii DSM 22836651324027draftimg742767
66792Dysgonomonas mossii DSM 228362515154085draftimg742767
67770Dysgonomonas mossii DSM 22836GCA_000213575scaffoldncbi742767
67770Dysgonomonas mossii DSM 22836GCA_000376405contigncbi742767

GC content

@refGC-contentmethod
1654138.5high performance liquid chromatography (HPLC)
1654137.5sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno88.93no
flagellatedno96.773no
gram-positiveno97.067yes
anaerobicyes94.91no
aerobicno96.733yes
halophileno96.632no
spore-formingno93.902yes
thermophileno99.573yes
glucose-utilyes86.209no
glucose-fermentyes65.513no

External links

@ref: 16541

culture collection no.: DSM 22836, CCUG 43457, CDC F9489, CIP 107079, JCM 16699

straininfo link

  • @ref: 81736
  • straininfo: 100423

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12353872Dysgonomonas mossii sp. nov., from human sources.Lawson PA, Falsen E, Inganas E, Weyant RS, Collins MDSyst Appl Microbiol10.1078/0723-2020-001072002Base Sequence, DNA, Bacterial/genetics, Gram-Negative Anaerobic Bacteria/*classification/genetics/*isolation & purification, Gram-Negative Bacterial Infections/microbiology, Humans, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/analysis, Sequence Analysis, DNAPathogenicity
Phylogeny22307505Dysgonomonas oryzarvi sp. nov., isolated from a microbial fuel cell.Kodama Y, Shimoyama T, Watanabe KInt J Syst Evol Microbiol10.1099/ijs.0.039040-02012Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, Bioelectric Energy Sources/*microbiology, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil MicrobiologyGenetics
Phylogeny26297040Dysgonomonas alginatilytica sp. nov., an alginate-degrading bacterium isolated from a microbial consortium.Kita A, Miura T, Okamura Y, Aki T, Matsumura Y, Tajima T, Kato J, Nakashimada YInt J Syst Evol Microbiol10.1099/ijsem.0.0004592015Alginates/*metabolism, Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermentation, Glucuronic Acid/metabolism, Hexuronic Acids/metabolism, Japan, *Microbial Consortia, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/chemistryMetabolism
Phylogeny35913210Dysgonomonas mossii Strain Shenzhen WH 0221, a New Member of the Genus Dysgonomonas Isolated from the Blood of a Patient with Diabetic Nephropathy, Exhibits Multiple Antibiotic Resistance.Gao X, Wei J, Hao T, Yang T, Han X, Li M, Li X, Xiong D, Zhang XMicrobiol Spectr10.1128/spectrum.02381-212022Animals, Anti-Bacterial Agents/pharmacology, Bacterial Typing Techniques, Bacteroidetes, DNA, Bacterial/genetics, *Diabetes Mellitus, *Diabetic Nephropathies, Drug Resistance, Microbial, Phylogeny, RNA, Ribosomal, 16S/genetics, *Sepsis, Sequence Analysis, DNA, Sheep/geneticsTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16541Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22836)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22836
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33044Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/19280
55874Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 43457)https://www.ccug.se/strain?id=43457
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68367Automatically annotated from API 20A
68377Automatically annotated from API NH
68380Automatically annotated from API rID32A
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
81736Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID100423.1StrainInfo: A central database for resolving microbial strain identifiers
121148Curators of the CIPCollection of Institut Pasteur (CIP 107079)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107079