Strain identifier

BacDive ID: 1237

Type strain: Yes

Species: Fictibacillus arsenicus

Strain history: CIP <- 2013, DSMZ <- S. Shivaji, CCMB, Hyderabad, India: strain Con a/3, Bacillus arsenicus

NCBI tax ID(s): 255247 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 6035

BacDive-ID: 1237

DSM-Number: 15822

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Fictibacillus arsenicus DSM 15822 is an aerobe, spore-forming, mesophilic bacterium that was isolated from concretions of arsenic ore.

NCBI tax id

  • NCBI tax id: 255247
  • Matching level: species

strain history

@refhistory
6035<- S. Shivaji, CCMB; Con a/3
116505CIP <- 2013, DSMZ <- S. Shivaji, CCMB, Hyderabad, India: strain Con a/3, Bacillus arsenicus

doi: 10.13145/bacdive1237.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Fictibacillus
  • species: Fictibacillus arsenicus
  • full scientific name: Fictibacillus arsenicus (Shivaji et al. 2005) Glaeser et al. 2013

  • synonyms

    • @ref: 20215
    • synonym: Bacillus arsenicus

@ref: 6035

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Fictibacillus

species: Fictibacillus arsenicus

full scientific name: Fictibacillus arsenicus (Shivaji et al. 2005) Glaeser et al. 2013

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
31402positive1.2 µm0.4 µmrod-shapedyes
116505positiverod-shapedyes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6035CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
41022MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116505CIP Medium 469yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=469
116505CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
6035positivegrowth30mesophilic
31402positivegrowth20-40
31402positiveoptimum30mesophilic
41022positivegrowth30mesophilic

culture pH

@refabilitytypepH
31402positivegrowth5.5-8.0
31402positiveoptimum6.8

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31402aerobe
116505obligate aerobe

spore formation

  • @ref: 31402
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
31402NaClpositivegrowth0.0-1.0 %
31402NaClpositiveoptimum0.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3140228757fructose+carbon source
3140217234glucose+carbon source
3140227570histidine+carbon source
3140224996lactate+carbon source
3140217306maltose+carbon source
3140229864mannitol+carbon source
3140228053melibiose+carbon source
3140216634raffinose+carbon source
3140230911sorbitol+carbon source
3140217992sucrose+carbon source
11650517632nitrate-reduction
11650516301nitrite-reduction

metabolite production

  • @ref: 116505
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
31402catalase+1.11.1.6
31402gelatinase+
31402cytochrome oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
116505oxidase+
116505catalase+1.11.1.6
116505urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116505-+++-----------+----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6035concretions of arsenic oreWest Bengal, Chakda districtIndiaINDAsia
116505Concretions of arsenic oreBengalIndiaINDAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Geologic

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
60351Risk group (German classification)
1165051Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6035
  • description: Bacillus arsenicus partial 16S rRNA gene, type strain con a/3
  • accession: AJ606700
  • length: 1515
  • database: ena
  • NCBI tax ID: 255247

GC content

@refGC-content
603535.0
3140235

External links

@ref: 6035

culture collection no.: DSM 15822, CIP 108785, JCM 12167, MTCC 4380, Con a/3

straininfo link

  • @ref: 70893
  • straininfo: 138969

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15879243Bacillus arsenicus sp. nov., an arsenic-resistant bacterium isolated from a siderite concretion in West Bengal, India.Shivaji S, Suresh K, Chaturvedi P, Dube S, Sengupta SInt J Syst Evol Microbiol10.1099/ijs.0.63476-02005Anti-Bacterial Agents/*pharmacology, Arsenic/*pharmacology, Arsenites/pharmacology, Bacillus/*classification/*drug effects/isolation & purification/physiology, Bacterial Typing Techniques, Carbonates, Cyanoacrylates/analysis/isolation & purification, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Diaminopimelic Acid/analysis/isolation & purification, Drug Resistance, Bacterial, Fatty Acids/analysis/isolation & purification, Ferric Compounds, Genes, rRNA, India, Molecular Sequence Data, Movement, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial, Vitamin K 2/analysis/isolation & purificationEnzymology
Phylogeny23355698Fictibacillus phosphorivorans gen. nov., sp. nov. and proposal to reclassify Bacillus arsenicus, Bacillus barbaricus, Bacillus macauensis, Bacillus nanhaiensis, Bacillus rigui, Bacillus solisalsi and Bacillus gelatini in the genus Fictibacillus.Glaeser SP, Dott W, Busse HJ, Kampfer PInt J Syst Evol Microbiol10.1099/ijs.0.049171-02013Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, *Phylogeny, Polyamines/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny27031366Fictibacillus halophilus sp. nov., from a microbial mat of a hot spring atop the Himalayan Range.Sharma A, Kohli P, Singh Y, Schumann P, Lal RInt J Syst Evol Microbiol10.1099/ijsem.0.0010512016Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA Gyrase/genetics, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Hot Springs/*microbiology, India, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
6035Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15822)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15822
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31402Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2771128776041
41022Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6452
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
68382Automatically annotated from API zym
70893Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID138969.1StrainInfo: A central database for resolving microbial strain identifiers
116505Curators of the CIPCollection of Institut Pasteur (CIP 108785)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108785