Strain identifier

BacDive ID: 12062

Type strain: Yes

Species: Sorangium cellulosum

Strain Designation: So ce1871

Strain history: DSM 14627 <-- H. Reichenbach So ce1871.

NCBI tax ID(s): 56 (species)

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General

@ref: 5420

BacDive-ID: 12062

DSM-Number: 14627

keywords: 16S sequence, Bacteria, mesophilic

description: Sorangium cellulosum So ce1871 is a mesophilic bacterium that builds a fruiting body and was isolated from soil with decaying plant material.

NCBI tax id

  • NCBI tax id: 56
  • Matching level: species

strain history

@refhistory
5420<- H. Reichenbach; So ce1871
67770DSM 14627 <-- H. Reichenbach So ce1871.

doi: 10.13145/bacdive12062.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Myxococcales
  • family: Polyangiaceae
  • genus: Sorangium
  • species: Sorangium cellulosum
  • full scientific name: Sorangium cellulosum (Brockman 1989 ex Imshenetski and Solntseva 1936) Reichenbach 2007
  • synonyms

    • @ref: 20215
    • synonym: Polyangium cellulosum

@ref: 5420

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Myxococcales

family: Polyangiaceae

genus: Sorangium

species: Sorangium cellulosum

full scientific name: Sorangium cellulosum (Brockman 1989) Reichenbach 2007

strain designation: So ce1871

type strain: yes

Morphology

multicellular morphology

  • @ref: 18281
  • forms multicellular complex: yes
  • complex name: fruiting body

multimedia

  • @ref: 5420
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_14627.jpg
  • caption: fruiting bodies on agar medium 9. The small entities are sporangioles which may be 15-40 µm in diameter
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5420VY/2 AGAR (DSMZ Medium 9)yeshttps://mediadive.dsmz.de/medium/9Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water
5420ST21 AGAR FOR CELLULOSE DEGRADERS (DSMZ Medium 938)yeshttps://mediadive.dsmz.de/medium/938Name: ST21 AGAR FOR CELLULOSE DEGRADERS (DSMZ Medium 938) Composition: Agar 14.0 g/l K2HPO4 1.0 g/l CaCl2 x 2 H2O 0.999999 g/l MgSO4 x 7 H2O 0.999999 g/l KNO3 0.999999 g/l FeCl3 0.2 g/l MnSO4 x 7 H2O 0.0999999 g/l Yeast extract 0.02 g/l Tap water Distilled water

culture temp

@refgrowthtypetemperaturerange
5420positivegrowth30mesophilic
67770positivegrowth30mesophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
5420soil with decaying plant materialRhodosGreeceGRCEurope
67770Soil with plant residuesRhodos IslandGreeceGRCEurope

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Decomposing plant

taxonmaps

  • @ref: 69479
  • File name: preview.99_4601.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_400;96_2211;97_2676;98_3320;99_4601&stattab=map
  • Last taxonomy: Sorangium cellulosum subclade
  • 16S sequence: FJ457641
  • Sequence Identity:
  • Total samples: 14500
  • soil counts: 8839
  • aquatic counts: 2417
  • animal counts: 545
  • plant counts: 2699

Safety information

risk assessment

  • @ref: 5420
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Sorangium cellulosum strain DSM14627 16S ribosomal RNA gene, partial sequenceEU2404971520ena56
5420Sorangium cellulosum strain DSM14627 16S ribosomal RNA gene, partial sequenceFJ4576411553ena56

External links

@ref: 5420

culture collection no.: DSM 14627, CIP 109122, JCM 12707

straininfo link

  • @ref: 81281
  • straininfo: 215410

literature

  • topic: Phylogeny
  • Pubmed-ID: 27046779
  • title: Racemicystis crocea gen. nov., sp. nov., a soil myxobacterium in the family Polyangiaceae.
  • authors: Awal RP, Garcia R, Muller R
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001045
  • year: 2016
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Myxococcales/*classification/genetics/isolation & purification, Philippines, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology
  • topic2: Transcriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5420Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14627)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14627
18281Reichenbach, H.Collection description and documentation of myxobacteria by H. Reichenbach, HZI (formerly GBF); Collection curr. located at the DSMZ
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
81281Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID215410.1StrainInfo: A central database for resolving microbial strain identifiers