Strain identifier
BacDive ID: 12062
Type strain:
Species: Sorangium cellulosum
Strain Designation: So ce1871
Strain history: DSM 14627 <-- H. Reichenbach So ce1871.
NCBI tax ID(s): 56 (species)
General
@ref: 5420
BacDive-ID: 12062
DSM-Number: 14627
keywords: 16S sequence, Bacteria, mesophilic
description: Sorangium cellulosum So ce1871 is a mesophilic bacterium that builds a fruiting body and was isolated from soil with decaying plant material.
NCBI tax id
- NCBI tax id: 56
- Matching level: species
strain history
@ref | history |
---|---|
5420 | <- H. Reichenbach; So ce1871 |
67770 | DSM 14627 <-- H. Reichenbach So ce1871. |
doi: 10.13145/bacdive12062.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Myxococcales
- family: Polyangiaceae
- genus: Sorangium
- species: Sorangium cellulosum
- full scientific name: Sorangium cellulosum (Brockman 1989 ex Imshenetski and Solntseva 1936) Reichenbach 2007
synonyms
- @ref: 20215
- synonym: Polyangium cellulosum
@ref: 5420
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Myxococcales
family: Polyangiaceae
genus: Sorangium
species: Sorangium cellulosum
full scientific name: Sorangium cellulosum (Brockman 1989) Reichenbach 2007
strain designation: So ce1871
type strain: yes
Morphology
multicellular morphology
- @ref: 18281
- forms multicellular complex: yes
- complex name: fruiting body
multimedia
- @ref: 5420
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_14627.jpg
- caption: fruiting bodies on agar medium 9. The small entities are sporangioles which may be 15-40 µm in diameter
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
5420 | VY/2 AGAR (DSMZ Medium 9) | yes | https://mediadive.dsmz.de/medium/9 | Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water |
5420 | ST21 AGAR FOR CELLULOSE DEGRADERS (DSMZ Medium 938) | yes | https://mediadive.dsmz.de/medium/938 | Name: ST21 AGAR FOR CELLULOSE DEGRADERS (DSMZ Medium 938) Composition: Agar 14.0 g/l K2HPO4 1.0 g/l CaCl2 x 2 H2O 0.999999 g/l MgSO4 x 7 H2O 0.999999 g/l KNO3 0.999999 g/l FeCl3 0.2 g/l MnSO4 x 7 H2O 0.0999999 g/l Yeast extract 0.02 g/l Tap water Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
5420 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
5420 | soil with decaying plant material | Rhodos | Greece | GRC | Europe |
67770 | Soil with plant residues | Rhodos Island | Greece | GRC | Europe |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Soil |
#Host | #Plants | #Decomposing plant |
taxonmaps
- @ref: 69479
- File name: preview.99_4601.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_400;96_2211;97_2676;98_3320;99_4601&stattab=map
- Last taxonomy: Sorangium cellulosum subclade
- 16S sequence: FJ457641
- Sequence Identity:
- Total samples: 14500
- soil counts: 8839
- aquatic counts: 2417
- animal counts: 545
- plant counts: 2699
Safety information
risk assessment
- @ref: 5420
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Sorangium cellulosum strain DSM14627 16S ribosomal RNA gene, partial sequence | EU240497 | 1520 | ena | 56 |
5420 | Sorangium cellulosum strain DSM14627 16S ribosomal RNA gene, partial sequence | FJ457641 | 1553 | ena | 56 |
External links
@ref: 5420
culture collection no.: DSM 14627, CIP 109122, JCM 12707
straininfo link
- @ref: 81281
- straininfo: 215410
literature
- topic: Phylogeny
- Pubmed-ID: 27046779
- title: Racemicystis crocea gen. nov., sp. nov., a soil myxobacterium in the family Polyangiaceae.
- authors: Awal RP, Garcia R, Muller R
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.001045
- year: 2016
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Myxococcales/*classification/genetics/isolation & purification, Philippines, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology
- topic2: Transcriptome
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
5420 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14627) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14627 | |||
18281 | Reichenbach, H. | Collection description and documentation of myxobacteria by H. Reichenbach, HZI (formerly GBF); Collection curr. located at the DSMZ | ||||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
81281 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID215410.1 | StrainInfo: A central database for resolving microbial strain identifiers |