Strain identifier
BacDive ID: 11994
Type strain:
Species: Sporosarcina aquimarina
Strain Designation: SW28
Strain history: CIP <- 2002, J-H Yoon, KRIBB, Taejon, Korea: strain SW28
NCBI tax ID(s): 114975 (species)
General
@ref: 5295
BacDive-ID: 11994
DSM-Number: 14554
keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, motile, rod-shaped
description: Sporosarcina aquimarina SW28 is an aerobe, spore-forming, mesophilic bacterium that was isolated from seawater.
NCBI tax id
- NCBI tax id: 114975
- Matching level: species
strain history
@ref | history |
---|---|
5295 | <- J.-H. Yoon, KRIBB, Korea; SW28 |
67770 | Y.-H. Park SW28. |
67771 | <- JCM <- Y -H Park SW28 |
116454 | CIP <- 2002, J-H Yoon, KRIBB, Taejon, Korea: strain SW28 |
doi: 10.13145/bacdive11994.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Caryophanaceae
- genus: Sporosarcina
- species: Sporosarcina aquimarina
- full scientific name: Sporosarcina aquimarina Yoon et al. 2001
@ref: 5295
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Caryophanaceae
genus: Sporosarcina
species: Sporosarcina aquimarina
full scientific name: Sporosarcina aquimarina Yoon et al. 2001
strain designation: SW28
type strain: yes
Morphology
cell morphology
@ref | cell shape | motility | flagellum arrangement | gram stain |
---|---|---|---|---|
67771 | rod-shaped | yes | monotrichous, polar | |
67771 | positive | |||
116454 | rod-shaped | yes | positive |
colony morphology
- @ref: 116454
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
5295 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
32867 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
116454 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
5295 | positive | growth | 25 | mesophilic |
32867 | positive | growth | 25 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
67771 | positive | growth | 25 | mesophilic |
116454 | positive | growth | 10-37 | |
116454 | no | growth | 45 | thermophilic |
116454 | no | growth | 55 | thermophilic |
culture pH
- @ref: 116454
- ability: positive
- type: growth
- pH: 6
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
67771 | aerobe |
116454 | obligate aerobe |
spore formation
- @ref: 67771
- type of spore: endospore
- spore formation: yes
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
116454 | NaCl | positive | growth | 2-10 % |
116454 | NaCl | no | growth | 0 % |
observation
@ref | observation |
---|---|
67770 | quinones: MK-7 |
67771 | quinones: MK-7 |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | - | builds acid from | 27082 |
68371 | sucrose | - | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | - | builds acid from | 17716 |
68371 | maltose | - | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | - | builds acid from | 17814 |
68371 | esculin | - | builds acid from | 4853 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | - | builds acid from | 16024 |
68371 | D-fructose | - | builds acid from | 15824 |
68371 | D-glucose | - | builds acid from | 17634 |
68371 | D-galactose | - | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | - | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
116454 | citrate | - | carbon source | 16947 |
116454 | esculin | - | hydrolysis | 4853 |
116454 | hippurate | - | hydrolysis | 606565 |
116454 | nitrate | + | reduction | 17632 |
116454 | nitrite | - | reduction | 16301 |
116454 | nitrate | - | respiration | 17632 |
metabolite production
- @ref: 116454
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
116454 | 15688 | acetoin | - | |
116454 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
116454 | oxidase | + | |
116454 | beta-galactosidase | - | 3.2.1.23 |
116454 | alcohol dehydrogenase | - | 1.1.1.1 |
116454 | gelatinase | +/- | |
116454 | amylase | - | |
116454 | DNase | + | |
116454 | caseinase | - | 3.4.21.50 |
116454 | catalase | + | 1.11.1.6 |
116454 | tween esterase | - | |
116454 | gamma-glutamyltransferase | - | 2.3.2.2 |
116454 | lecithinase | - | |
116454 | lipase | - | |
116454 | lysine decarboxylase | - | 4.1.1.18 |
116454 | ornithine decarboxylase | - | 4.1.1.17 |
116454 | urease | + | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | - | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116454 | - | + | + | - | - | + | - | - | + | - | + | - | - | - | - | - | - | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116454 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
5295 | seawater | Korea | Republic of Korea | KOR | Asia |
60982 | Seawater | Republic of Korea | KOR | Asia | |
67770 | Seawater | Republic of Korea | KOR | Asia | |
67771 | From Seawater in Korea | Republic of Korea | KOR | Asia | |
116454 | Environment, Sea water | Republic of Korea | KOR | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
5295 | 1 | Risk group (German classification) |
116454 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 5295
- description: Bacillus aquamarinus 16S ribosomal RNA gene, partial sequence
- accession: AF202056
- length: 1508
- database: ena
- NCBI tax ID: 114975
GC content
@ref | GC-content | method |
---|---|---|
5295 | 40 | |
67770 | 40 | high performance liquid chromatography (HPLC) |
67771 | 40.0 | high performance liquid chromatography (HPLC) |
External links
@ref: 5295
culture collection no.: DSM 14554, JCM 10887, KCCM 41039, CCUG 56481, KCTC 3840, ATCC BAA 723, CGMCC 1.3644, CIP 107478
straininfo link
@ref | straininfo |
---|---|
81208 | 100965 |
81209 | 412286 |
literature
- topic: Phylogeny
- Pubmed-ID: 11411676
- title: Sporosarcina aquimarina sp. nov., a bacterium isolated from seawater in Korea, and transfer of Bacillus globisporus (Larkin and Stokes 1967), Bacillus psychrophilus (Nakamura 1984) and Bacillus pasteurii (Chester 1898) to the genus Sporosarcina as Sporosarcina globispora comb. nov., Sporosarcina psychrophila comb. nov. and Sporosarcina pasteurii comb. nov., and emended description of th.
- authors: Yoon JH, Lee KC, Weiss N, Kho YH, Kang KH, Park YH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/00207713-51-3-1079
- year: 2001
- mesh: Bacillaceae/*classification/genetics/isolation & purification, Bacillus/*classification/*genetics/isolation & purification, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology
- topic2: Enzymology
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
5295 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14554) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14554 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
32867 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/4918 | ||
60982 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 56481) | https://www.ccug.se/strain?id=56481 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
68371 | Automatically annotated from API 50CH acid | |||
68382 | Automatically annotated from API zym | |||
81208 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID100965.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
81209 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID412286.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
116454 | Curators of the CIP | Collection of Institut Pasteur (CIP 107478) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107478 |