Strain identifier

BacDive ID: 11994

Type strain: Yes

Species: Sporosarcina aquimarina

Strain Designation: SW28

Strain history: CIP <- 2002, J-H Yoon, KRIBB, Taejon, Korea: strain SW28

NCBI tax ID(s): 114975 (species)

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General

@ref: 5295

BacDive-ID: 11994

DSM-Number: 14554

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, motile, rod-shaped

description: Sporosarcina aquimarina SW28 is an aerobe, spore-forming, mesophilic bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 114975
  • Matching level: species

strain history

@refhistory
5295<- J.-H. Yoon, KRIBB, Korea; SW28
67770Y.-H. Park SW28.
67771<- JCM <- Y -H Park SW28
116454CIP <- 2002, J-H Yoon, KRIBB, Taejon, Korea: strain SW28

doi: 10.13145/bacdive11994.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Sporosarcina
  • species: Sporosarcina aquimarina
  • full scientific name: Sporosarcina aquimarina Yoon et al. 2001

@ref: 5295

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Caryophanaceae

genus: Sporosarcina

species: Sporosarcina aquimarina

full scientific name: Sporosarcina aquimarina Yoon et al. 2001

strain designation: SW28

type strain: yes

Morphology

cell morphology

@refcell shapemotilityflagellum arrangementgram stain
67771rod-shapedyesmonotrichous, polar
67771positive
116454rod-shapedyespositive

colony morphology

  • @ref: 116454

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5295CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
32867MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116454CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
5295positivegrowth25mesophilic
32867positivegrowth25mesophilic
67770positivegrowth30mesophilic
67771positivegrowth25mesophilic
116454positivegrowth10-37
116454nogrowth45thermophilic
116454nogrowth55thermophilic

culture pH

  • @ref: 116454
  • ability: positive
  • type: growth
  • pH: 6

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
67771aerobe
116454obligate aerobe

spore formation

  • @ref: 67771
  • type of spore: endospore
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
116454NaClpositivegrowth2-10 %
116454NaClnogrowth0 %

observation

@refobservation
67770quinones: MK-7
67771quinones: MK-7

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
116454citrate-carbon source16947
116454esculin-hydrolysis4853
116454hippurate-hydrolysis606565
116454nitrate+reduction17632
116454nitrite-reduction16301
116454nitrate-respiration17632

metabolite production

  • @ref: 116454
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11645415688acetoin-
11645417234glucose-

enzymes

@refvalueactivityec
116454oxidase+
116454beta-galactosidase-3.2.1.23
116454alcohol dehydrogenase-1.1.1.1
116454gelatinase+/-
116454amylase-
116454DNase+
116454caseinase-3.4.21.50
116454catalase+1.11.1.6
116454tween esterase-
116454gamma-glutamyltransferase-2.3.2.2
116454lecithinase-
116454lipase-
116454lysine decarboxylase-4.1.1.18
116454ornithine decarboxylase-4.1.1.17
116454urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116454-++--+--+-+---------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116454---------------------+/----------------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
5295seawaterKoreaRepublic of KoreaKORAsia
60982SeawaterRepublic of KoreaKORAsia
67770SeawaterRepublic of KoreaKORAsia
67771From Seawater in KoreaRepublic of KoreaKORAsia
116454Environment, Sea waterRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
52951Risk group (German classification)
1164541Risk group (French classification)

Sequence information

16S sequences

  • @ref: 5295
  • description: Bacillus aquamarinus 16S ribosomal RNA gene, partial sequence
  • accession: AF202056
  • length: 1508
  • database: ena
  • NCBI tax ID: 114975

GC content

@refGC-contentmethod
529540
6777040high performance liquid chromatography (HPLC)
6777140.0high performance liquid chromatography (HPLC)

External links

@ref: 5295

culture collection no.: DSM 14554, JCM 10887, KCCM 41039, CCUG 56481, KCTC 3840, ATCC BAA 723, CGMCC 1.3644, CIP 107478

straininfo link

@refstraininfo
81208100965
81209412286

literature

  • topic: Phylogeny
  • Pubmed-ID: 11411676
  • title: Sporosarcina aquimarina sp. nov., a bacterium isolated from seawater in Korea, and transfer of Bacillus globisporus (Larkin and Stokes 1967), Bacillus psychrophilus (Nakamura 1984) and Bacillus pasteurii (Chester 1898) to the genus Sporosarcina as Sporosarcina globispora comb. nov., Sporosarcina psychrophila comb. nov. and Sporosarcina pasteurii comb. nov., and emended description of th.
  • authors: Yoon JH, Lee KC, Weiss N, Kho YH, Kang KH, Park YH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-51-3-1079
  • year: 2001
  • mesh: Bacillaceae/*classification/genetics/isolation & purification, Bacillus/*classification/*genetics/isolation & purification, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitle
5295Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14554)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14554
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32867Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4918
60982Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 56481)https://www.ccug.se/strain?id=56481
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
81208Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID100965.1StrainInfo: A central database for resolving microbial strain identifiers
81209Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID412286.1StrainInfo: A central database for resolving microbial strain identifiers
116454Curators of the CIPCollection of Institut Pasteur (CIP 107478)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107478