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Strain identifier

BacDive ID: 11990

Type strain: Yes

Species: Sporosarcina ureae

Strain history: M. V. Hao HK 806 <-- AJ 1233 <-- CCM 684 <-- ATCC 6473 <-- N. R. Smith NRS 42 <-- F. Löhnis <-- Král Collection <-- M. W. Beijerinck.

NCBI tax ID(s): 1123290 (strain), 1571 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 1016

BacDive-ID: 11990

DSM-Number: 2281

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Sporosarcina ureae DSM 2281 is a mesophilic bacterium of the family Caryophanaceae.

NCBI tax id

NCBI tax idMatching level
1571species
1123290strain

strain history

doi: 10.13145/bacdive11990.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Sporosarcina
  • species: Sporosarcina ureae
  • full scientific name: Sporosarcina ureae (Beijerinck 1901) Kluyver and van Niel 1936 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Planosarcina ureae

@ref: 1016

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Caryophanaceae

genus: Sporosarcina

species: Sporosarcina ureae

full scientific name: Sporosarcina ureae (Beijerinck 1901) Kluyver and van Niel 1936

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 91.645

multimedia

@refmultimedia contentcaptionintellectual property rights
66793EM_DSM_2281_1.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_2281_2.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_2281_3.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_2281_4.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_2281_5.jpgelectron microscopic image© HZI/Manfred Rohde

Culture and growth conditions

culture medium

  • @ref: 1016
  • name: BACILLUS PASTEURII MEDIUM (DSMZ Medium 2)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/2
  • composition: Name: BACILLUS PASTEURII MEDIUM (DSMZ Medium 2) Composition: Urea 20.0 g/l Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
1016positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: yes
  • confidence: 82.951

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 19.724

observation

  • @ref: 67770
  • observation: quinones: MK-7

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_312.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_217;97_236;98_265;99_312&stattab=map
  • Last taxonomy: Sporosarcina ureae subclade
  • 16S sequence: AF202057
  • Sequence Identity:
  • Total samples: 3832
  • soil counts: 999
  • aquatic counts: 414
  • animal counts: 2247
  • plant counts: 172

Safety information

risk assessment

  • @ref: 1016
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Sporosarcina ureae 16S ribosomal RNA gene, partial sequenceAF2020571507ena1571
20218Sporosarcina ureae gene for 16S rRNA, partial sequenceAB006949275ena1571
20218Sporosarcina ureae gene for 16S rRNA, partial sequence, strain: NBRC 12699AB6803271477ena1571
20218S.halophila 16S rRNAX621741496ena1570
20218S. ureae 16S rRNAX621751430ena1571

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Sporosarcina ureae DSM 22811123290.4wgspatric1123290
66792Sporosarcina ureae DSM 22812523533529draftimg1123290
67770Sporosarcina ureae DSM 2281 DSM 2281GCA_000425545scaffoldncbi1123290

GC content

@refGC-content
101640.0
6777043

External links

@ref: 1016

culture collection no.: DSM 2281, ATCC 6473, CCM 684, NCIB 9251, JCM 2577, IAM 13053, IFO 12699, LMG 17366, NBRC 12699, NCIMB 9251, VKM B-595

straininfo link

@refpassport
20218http://www.straininfo.net/strains/40726
20218http://www.straininfo.net/strains/40724
20218http://www.straininfo.net/strains/40725
20218http://www.straininfo.net/strains/157842

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11411676Sporosarcina aquimarina sp. nov., a bacterium isolated from seawater in Korea, and transfer of Bacillus globisporus (Larkin and Stokes 1967), Bacillus psychrophilus (Nakamura 1984) and Bacillus pasteurii (Chester 1898) to the genus Sporosarcina as Sporosarcina globispora comb. nov., Sporosarcina psychrophila comb. nov. and Sporosarcina pasteurii comb. nov., and emended description of th.Yoon JH, Lee KC, Weiss N, Kho YH, Kang KH, Park YHInt J Syst Evol Microbiol10.1099/00207713-51-3-10792001Bacillaceae/*classification/genetics/isolation & purification, Bacillus/*classification/*genetics/isolation & purification, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiologyEnzymology
Phylogeny19502317Description of Paenisporosarcina quisquiliarum gen. nov., sp. nov., and reclassification of Sporosarcina macmurdoensis Reddy et al. 2003 as Paenisporosarcina macmurdoensis comb. nov.Krishnamurthi S, Bhattacharya A, Mayilraj S, Saha P, Schumann P, Chakrabarti TInt J Syst Evol Microbiol10.1099/ijs.0.65130-02009Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Gram-Positive Bacteria/*classification/genetics/isolation & purification/physiology, India, Lipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, *Refuse Disposal, Sequence Analysis, DNA, *Soil Microbiology, Species SpecificityGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1016Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2281)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2281
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life 35: 676-683 201728604660
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)