Strain identifier
BacDive ID: 11990
Type strain: 
Species: Sporosarcina ureae
Strain history: M. V. Hao HK 806 <-- AJ 1233 <-- CCM 684 <-- ATCC 6473 <-- N. R. Smith NRS 42 <-- F. Löhnis <-- Král Collection <-- M. W. Beijerinck.
NCBI tax ID(s): 1123290 (strain), 1571 (species)
version 8.1 (current version)
General
@ref: 1016
BacDive-ID: 11990
DSM-Number: 2281
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Sporosarcina ureae DSM 2281 is a mesophilic bacterium of the family Caryophanaceae.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1571 | species |
| 1123290 | strain |
strain history
| @ref | history |
|---|---|
| 1016 | <- CCM <- ATCC <- N.R. Smith <- F. Löhnis <- Kral Collection <- M.W. Beijerinck |
| 67770 | M. V. Hao HK 806 <-- AJ 1233 <-- CCM 684 <-- ATCC 6473 <-- N. R. Smith NRS 42 <-- F. Löhnis <-- Král Collection <-- M. W. Beijerinck. |
doi: 10.13145/bacdive11990.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Caryophanaceae
- genus: Sporosarcina
- species: Sporosarcina ureae
- full scientific name: Sporosarcina ureae (Beijerinck 1901) Kluyver and van Niel 1936 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Planosarcina ureae
@ref: 1016
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Caryophanaceae
genus: Sporosarcina
species: Sporosarcina ureae
full scientific name: Sporosarcina ureae (Beijerinck 1901) Kluyver and van Niel 1936
type strain: yes
Morphology
multimedia
| @ref | multimedia content | caption | intellectual property rights |
|---|---|---|---|
| 66793 | EM_DSM_2281_1.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_2281_2.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_2281_3.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_2281_4.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_2281_5.jpg | electron microscopic image | © HZI/Manfred Rohde |
Culture and growth conditions
culture medium
- @ref: 1016
- name: BACILLUS PASTEURII MEDIUM (DSMZ Medium 2)
- growth: yes
- link: https://mediadive.dsmz.de/medium/2
- composition: Name: BACILLUS PASTEURII MEDIUM (DSMZ Medium 2) Composition: Urea 20.0 g/l Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 1016 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_312.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_217;97_236;98_265;99_312&stattab=map
- Last taxonomy: Sporosarcina ureae subclade
- 16S sequence: AF202057
- Sequence Identity:
- Total samples: 3832
- soil counts: 999
- aquatic counts: 414
- animal counts: 2247
- plant counts: 172
Safety information
risk assessment
- @ref: 1016
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Sporosarcina ureae 16S ribosomal RNA gene, partial sequence | AF202057 | 1507 | ena | 1571 |
| 20218 | Sporosarcina ureae gene for 16S rRNA, partial sequence | AB006949 | 275 | ena | 1571 |
| 20218 | Sporosarcina ureae gene for 16S rRNA, partial sequence, strain: NBRC 12699 | AB680327 | 1477 | ena | 1571 |
| 20218 | S.halophila 16S rRNA | X62174 | 1496 | ena | 1570 |
| 20218 | S. ureae 16S rRNA | X62175 | 1430 | ena | 1571 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Sporosarcina ureae DSM 2281 | 1123290.4 | wgs | patric | 1123290 |
| 66792 | Sporosarcina ureae DSM 2281 | 2523533529 | draft | img | 1123290 |
| 67770 | Sporosarcina ureae DSM 2281 | GCA_000425545 | scaffold | ncbi | 1123290 |
GC content
| @ref | GC-content |
|---|---|
| 1016 | 40.0 |
| 67770 | 43 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 78.262 | no |
| flagellated | yes | 53.596 | no |
| gram-positive | yes | 86.791 | no |
| anaerobic | no | 99.168 | no |
| aerobic | yes | 94.939 | no |
| halophile | yes | 60.236 | no |
| spore-forming | yes | 88.652 | no |
| thermophile | no | 98.12 | yes |
| glucose-util | yes | 79.617 | no |
| glucose-ferment | no | 91.94 | no |
External links
@ref: 1016
culture collection no.: DSM 2281, ATCC 6473, CCM 684, NCIB 9251, JCM 2577, IAM 13053, IFO 12699, LMG 17366, NBRC 12699, NCIMB 9251, VKM B-595
straininfo link
- @ref: 81204
- straininfo: 92581
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 11411676 | Sporosarcina aquimarina sp. nov., a bacterium isolated from seawater in Korea, and transfer of Bacillus globisporus (Larkin and Stokes 1967), Bacillus psychrophilus (Nakamura 1984) and Bacillus pasteurii (Chester 1898) to the genus Sporosarcina as Sporosarcina globispora comb. nov., Sporosarcina psychrophila comb. nov. and Sporosarcina pasteurii comb. nov., and emended description of th. | Yoon JH, Lee KC, Weiss N, Kho YH, Kang KH, Park YH | Int J Syst Evol Microbiol | 10.1099/00207713-51-3-1079 | 2001 | Bacillaceae/*classification/genetics/isolation & purification, Bacillus/*classification/*genetics/isolation & purification, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology | Enzymology |
| Phylogeny | 19502317 | Description of Paenisporosarcina quisquiliarum gen. nov., sp. nov., and reclassification of Sporosarcina macmurdoensis Reddy et al. 2003 as Paenisporosarcina macmurdoensis comb. nov. | Krishnamurthi S, Bhattacharya A, Mayilraj S, Saha P, Schumann P, Chakrabarti T | Int J Syst Evol Microbiol | 10.1099/ijs.0.65130-0 | 2009 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Gram-Positive Bacteria/*classification/genetics/isolation & purification/physiology, India, Lipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, *Refuse Disposal, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1016 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2281) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2281 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 81204 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92581.1 | StrainInfo: A central database for resolving microbial strain identifiers |