Strain identifier
BacDive ID: 11988
Type strain: 
Species: Sporosarcina ureae
Strain Designation: L.E.P.4
Strain history: M. V. Hao HK 802 <-- CCM 860 <-- C. B. van Niel L.E.1.4.
NCBI tax ID(s): 1571 (species)
version 8.1 (current version)
General
@ref: 106
BacDive-ID: 11988
DSM-Number: 320
keywords: Bacteria, mesophilic
description: Sporosarcina ureae L.E.P.4 is a mesophilic bacterium that was isolated from garden soil.
NCBI tax id
- NCBI tax id: 1571
- Matching level: species
strain history
| @ref | history |
|---|---|
| 106 | <- CCM <- C.B. van Niel, L.E.P.4 |
| 67770 | M. V. Hao HK 802 <-- CCM 860 <-- C. B. van Niel L.E.1.4. |
doi: 10.13145/bacdive11988.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Caryophanaceae
- genus: Sporosarcina
- species: Sporosarcina ureae
- full scientific name: Sporosarcina ureae (Beijerinck 1901) Kluyver and van Niel 1936 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Planosarcina ureae
@ref: 106
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Caryophanaceae
genus: Sporosarcina
species: Sporosarcina ureae
full scientific name: Sporosarcina ureae (Beijerinck 1901) Kluyver and van Niel 1936
strain designation: L.E.P.4
type strain: no
Culture and growth conditions
culture medium
- @ref: 106
- name: BACILLUS PASTEURII MEDIUM (DSMZ Medium 2)
- growth: yes
- link: https://mediadive.dsmz.de/medium/2
- composition: Name: BACILLUS PASTEURII MEDIUM (DSMZ Medium 2) Composition: Urea 20.0 g/l Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 106 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
compound production
- @ref: 106
- compound: urease
murein
- @ref: 106
- murein short key: A11.40
- type: A4alpha L-Lys-Gly-D-Glu
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 106 | garden soil |
| 67770 | Garden soil |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Engineered | #Agriculture | #Garden |
Safety information
risk assessment
- @ref: 106
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
GC content
| @ref | GC-content |
|---|---|
| 106 | 40.0 |
| 67770 | 40 |
| 67770 | 43.5 |
External links
@ref: 106
culture collection no.: DSM 320, ATCC 13881, CCM 860, NCIB 9151, JCM 2579, BCRC 10776, IAM 13055, NCIMB 9151
straininfo link
- @ref: 81202
- straininfo: 4991
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 17242964 | Isolation, gene structure, and comparative analysis of the S-layer gene sslA of Sporosarcina ureae ATCC 13881. | Ryzhkov PM, Ostermann K, Rodel G | Genetica | 10.1007/s10709-006-9135-0 | 2007 | Bacillus/genetics, Cell Wall/chemistry/genetics, Gene Components, Genes, Bacterial/*genetics, Gram-Positive Endospore-Forming Rods/*genetics/*ultrastructure, Membrane Glycoproteins/chemistry/*genetics/physiology, Metals/metabolism, Protein Structure, Tertiary, Sequence Homology, Nucleic Acid | Metabolism |
| Metabolism | 22101038 | Production, secretion, and cell surface display of recombinant Sporosarcina ureae S-layer fusion proteins in Bacillus megaterium. | Knobloch D, Ostermann K, Rodel G | Appl Environ Microbiol | 10.1128/AEM.06127-11 | 2011 | Bacillus megaterium/*genetics, Cloning, Molecular, Culture Media/chemistry, Gene Expression, Genetic Vectors, Hemagglutinin Glycoproteins, Influenza Virus/genetics/metabolism, Membrane Glycoproteins/*genetics/*metabolism, Plasmids, Protoplasts, Recombinant Fusion Proteins/genetics/metabolism, Sporosarcina/*genetics, Transformation, Bacterial | Enzymology |
| 27563868 | Truncation Derivatives of the S-Layer Protein of Sporosarcina ureae ATCC 13881 (SslA): Towards Elucidation of the Protein Domain Responsible for Self-Assembly. | Varga M | Molecules | 10.3390/molecules21091117 | 2016 | *Amino Acid Sequence, Membrane Glycoproteins/*chemistry/genetics, Protein Domains, Recombinant Proteins, *Sequence Deletion, Sporosarcina/*chemistry/genetics | ||
| 28335327 | Targeting at the Nanoscale: A Novel S-Layer Fusion Protein Enabling Controlled Immobilization of Biotinylated Molecules. | Varga M | Nanomaterials (Basel) | 10.3390/nano6110199 | 2016 |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 106 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 320) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-320 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 81202 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID4991.1 | StrainInfo: A central database for resolving microbial strain identifiers |