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Strain identifier

BacDive ID: 11988

Type strain: No

Species: Sporosarcina ureae

Strain Designation: L.E.P.4

Strain history: M. V. Hao HK 802 <-- CCM 860 <-- C. B. van Niel L.E.1.4.

NCBI tax ID(s): 1571 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 106

BacDive-ID: 11988

DSM-Number: 320

keywords: Bacteria, mesophilic

description: Sporosarcina ureae L.E.P.4 is a mesophilic bacterium that was isolated from garden soil.

NCBI tax id

  • NCBI tax id: 1571
  • Matching level: species

strain history

doi: 10.13145/bacdive11988.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Sporosarcina
  • species: Sporosarcina ureae
  • full scientific name: Sporosarcina ureae (Beijerinck 1901) Kluyver and van Niel 1936 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Planosarcina ureae

@ref: 106

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Caryophanaceae

genus: Sporosarcina

species: Sporosarcina ureae

full scientific name: Sporosarcina ureae (Beijerinck 1901) Kluyver and van Niel 1936

strain designation: L.E.P.4

type strain: no

Culture and growth conditions

culture medium

  • @ref: 106
  • name: BACILLUS PASTEURII MEDIUM (DSMZ Medium 2)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/2
  • composition: Name: BACILLUS PASTEURII MEDIUM (DSMZ Medium 2) Composition: Urea 20.0 g/l Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
106positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

compound production

  • @ref: 106
  • compound: urease

murein

  • @ref: 106
  • murein short key: A11.40
  • type: A4alpha L-Lys-Gly-D-Glu

Isolation, sampling and environmental information

isolation

@refsample type
106garden soil
67770Garden soil

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Engineered#Agriculture#Garden

Safety information

risk assessment

  • @ref: 106
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

GC content

@refGC-content
10640.0
6777040
6777043.5

External links

@ref: 106

culture collection no.: DSM 320, ATCC 13881, CCM 860, NCIB 9151, JCM 2579, BCRC 10776, IAM 13055, NCIMB 9151

straininfo link

@refpassport
20218http://www.straininfo.net/strains/21766
20218http://www.straininfo.net/strains/21763
20218http://www.straininfo.net/strains/21765
20218http://www.straininfo.net/strains/21770

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17242964Isolation, gene structure, and comparative analysis of the S-layer gene sslA of Sporosarcina ureae ATCC 13881.Ryzhkov PM, Ostermann K, Rodel GGenetica10.1007/s10709-006-9135-02007Bacillus/genetics, Cell Wall/chemistry/genetics, Gene Components, Genes, Bacterial/*genetics, Gram-Positive Endospore-Forming Rods/*genetics/*ultrastructure, Membrane Glycoproteins/chemistry/*genetics/physiology, Metals/metabolism, Protein Structure, Tertiary, Sequence Homology, Nucleic AcidMetabolism
Metabolism22101038Production, secretion, and cell surface display of recombinant Sporosarcina ureae S-layer fusion proteins in Bacillus megaterium.Knobloch D, Ostermann K, Rodel GAppl Environ Microbiol10.1128/AEM.06127-112011Bacillus megaterium/*genetics, Cloning, Molecular, Culture Media/chemistry, Gene Expression, Genetic Vectors, Hemagglutinin Glycoproteins, Influenza Virus/genetics/metabolism, Membrane Glycoproteins/*genetics/*metabolism, Plasmids, Protoplasts, Recombinant Fusion Proteins/genetics/metabolism, Sporosarcina/*genetics, Transformation, BacterialEnzymology
27563868Truncation Derivatives of the S-Layer Protein of Sporosarcina ureae ATCC 13881 (SslA): Towards Elucidation of the Protein Domain Responsible for Self-Assembly.Varga MMolecules10.3390/molecules210911172016*Amino Acid Sequence, Membrane Glycoproteins/*chemistry/genetics, Protein Domains, Recombinant Proteins, *Sequence Deletion, Sporosarcina/*chemistry/genetics
28335327Targeting at the Nanoscale: A Novel S-Layer Fusion Protein Enabling Controlled Immobilization of Biotinylated Molecules.Varga MNanomaterials (Basel)10.3390/nano61101992016

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
106Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 320)https://www.dsmz.de/collection/catalogue/details/culture/DSM-320
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/