Strain identifier
BacDive ID: 11985
Type strain: 
Species: Sporosarcina psychrophila
Strain Designation: T5A
Strain history: <- NRRL <- J.L. Stokes, Washington Univ., Larkin and Stokes T5A
NCBI tax ID(s): 1476 (species)
version 8.1 (current version)
General
@ref: 2702
BacDive-ID: 11985
DSM-Number: 6497
keywords: genome sequence, Bacteria, psychrophilic
description: Sporosarcina psychrophila T5A is a psychrophilic bacterium of the family Caryophanaceae.
NCBI tax id
- NCBI tax id: 1476
- Matching level: species
strain history
- @ref: 2702
- history: <- NRRL <- J.L. Stokes, Washington Univ., Larkin and Stokes T5A
doi: 10.13145/bacdive11985.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Caryophanaceae
- genus: Sporosarcina
- species: Sporosarcina psychrophila
- full scientific name: Sporosarcina psychrophila (Nakamura 1984 ex Larkin and Stokes 1967) Yoon et al. 2001
synonyms
- @ref: 20215
- synonym: Bacillus psychrophilus
@ref: 2702
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Caryophanaceae
genus: Sporosarcina
species: Sporosarcina psychrophila
full scientific name: Sporosarcina psychrophila (Nakamura 1984) Yoon et al. 2001
strain designation: T5A
type strain: no
Culture and growth conditions
culture medium
- @ref: 2702
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 2702
- growth: positive
- type: growth
- temperature: 20
- range: psychrophilic
Safety information
risk assessment
- @ref: 2702
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Sporosarcina psychrophila DSM 6497 | GCA_001590685 | complete | ncbi | 1476 |
| 66792 | Sporosarcina psychrophila strain DSM 6497 | 1476.3 | complete | patric | 1476 |
| 66792 | Sporosarcina psychrophila DSM 6497 | 2687453372 | complete | img | 1476 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 82.73 | no |
| gram-positive | yes | 87.497 | no |
| anaerobic | no | 98.965 | no |
| aerobic | yes | 94.802 | no |
| halophile | no | 59.517 | no |
| spore-forming | yes | 91.006 | no |
| glucose-util | yes | 87.203 | no |
| motile | yes | 89.001 | no |
| thermophile | no | 99.612 | yes |
| glucose-ferment | no | 89.385 | no |
External links
@ref: 2702
culture collection no.: DSM 6497, NRRL 1515
straininfo link
- @ref: 81199
- straininfo: 48221
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Genetics | 27015981 | Complete genome sequence of the Sporosarcina psychrophila DSM 6497, a psychrophilic Bacillus strain that mediates the calcium carbonate precipitation. | Yan W, Xiao X, Zhang Y | J Biotechnol | 10.1016/j.jbiotec.2016.03.036 | 2016 | Bacillus/*genetics, Base Sequence, Calcium Carbonate/*chemistry, Chemical Precipitation, DNA, Bacterial/genetics, *Genome, Bacterial, Sporosarcina/*genetics | |
| Transcriptome | 32995929 | Transcriptomic Analysis Reveals Common Adaptation Mechanisms Under Different Stresses for Moderately Piezophilic Bacteria. | Wang H, Zhang Y, Bartlett DH, Xiao X | Microb Ecol | 10.1007/s00248-020-01609-3 | 2020 | *Adaptation, Physiological/genetics, Bacillaceae, Bacteria/genetics, Sporosarcina, *Transcriptome | Stress |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2702 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6497) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6497 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 81199 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48221.1 | StrainInfo: A central database for resolving microbial strain identifiers |