Strain identifier

BacDive ID: 11984

Type strain: Yes

Species: Sporosarcina psychrophila

Strain Designation: W16A

Strain history: CIP <- 1988, DSM <- J.L. Stokes: strain W16A

NCBI tax ID(s): 1476 (species)

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General

@ref: 2011

BacDive-ID: 11984

DSM-Number: 3

keywords: 16S sequence, Bacteria, psychrophilic

description: Sporosarcina psychrophila W16A is a psychrophilic bacterium that was isolated from Soil and river water.

NCBI tax id

  • NCBI tax id: 1476
  • Matching level: species

strain history

@refhistory
2011<- J. L. Stokes; W16A
67770NRRL NRS-1530 <-- N. R. Smith NRS-1530 <-- J. L. Stokes W16A.
122023CIP <- 1988, DSM <- J.L. Stokes: strain W16A

doi: 10.13145/bacdive11984.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Sporosarcina
  • species: Sporosarcina psychrophila
  • full scientific name: Sporosarcina psychrophila (Nakamura 1984 ex Larkin and Stokes 1967) Yoon et al. 2001

  • synonyms

    • @ref: 20215
    • synonym: Bacillus psychrophilus

@ref: 2011

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Caryophanaceae

genus: Sporosarcina

species: Sporosarcina psychrophila

full scientific name: Sporosarcina psychrophila (Nakamura 1984) Yoon et al. 2001

strain designation: W16A

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2011NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
40586MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
122023CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
2011positivegrowth20psychrophilic
40586positivegrowth15psychrophilic
67770positivegrowth25mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Soil and river water

taxonmaps

  • @ref: 69479
  • File name: preview.99_4843.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1276;97_1516;98_3626;99_4843&stattab=map
  • Last taxonomy: Sporosarcina
  • 16S sequence: D16277
  • Sequence Identity:
  • Total samples: 18424
  • soil counts: 10719
  • aquatic counts: 2194
  • animal counts: 3706
  • plant counts: 1805

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
20111Risk group (German classification)
1220231Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Sporosarcina psychrophila clone Bp2F 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceAF478068373ena1476
20218B.psychrophilus 16S ribosomal RNAX606341428ena1476
20218Arenibacter sp. DSM3 16S ribosomal RNA gene, partial sequenceKC439188824ena1343207
20218Sporosarcina psychrophila gene for 16S rRNA, partial sequenceAB006933275ena1476
20218Sporosarcina psychrophila gene for 16S rRNA, partial sequence, strain: IAM 12468D162771485ena1476
20218Sporosarcina psychrophila gene for 16S rRNA, partial sequence, strain: NBRC 15381AB6808531477ena1476
20218B. psychrophilus rDNA for 16S rRNA (strain W16A)X549681552ena1476

GC content

@refGC-contentmethod
201144.1Buoyant density centrifugation (BD)
201140.5Buoyant density centrifugation (BD)
201139.7thermal denaturation, midpoint method (Tm)

External links

@ref: 2011

culture collection no.: DSM 3, ATCC 23304, CCM 2117, NRRL NRS-1530, CCUG 28886, NRRL B-3397, CIP 103267, LMG 6929, BCRC 11738, JCM 9075, CGMCC 1.3605, IAM 12468, IFO 15381, KCTC 3446, LMG 17352, LMG 7131, NBRC 15381, NRRL: NRS-1530

straininfo link

@refstraininfo
8119751842
81198312110

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2011Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3)https://www.dsmz.de/collection/catalogue/details/culture/DSM-3
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40586Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15046
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
81197Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID51842.1StrainInfo: A central database for resolving microbial strain identifiers
81198Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID312110.1StrainInfo: A central database for resolving microbial strain identifiers
122023Curators of the CIPCollection of Institut Pasteur (CIP 103267)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103267