Strain identifier

BacDive ID: 11970

Type strain: Yes

Species: Planococcus okeanokoites

Strain history: CIP <- 1997, IFO <- AJ 2511 <- CCM <- C.E. ZoBell

NCBI tax ID(s): 244 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 5953

BacDive-ID: 11970

DSM-Number: 15489

keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-positive, motile, rod-shaped

description: Planococcus okeanokoites DSM 15489 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from sea water .

NCBI tax id

  • NCBI tax id: 244
  • Matching level: species

strain history

@refhistory
5953<- CCM <- C. E. ZoBell, Bull. Scripps Inst. Oceanogr., Univ. Calif.
121404CIP <- 1997, IFO <- AJ 2511 <- CCM <- C.E. ZoBell

doi: 10.13145/bacdive11970.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Planococcus
  • species: Planococcus okeanokoites
  • full scientific name: Planococcus okeanokoites (ZoBell and Upham 1944) Nakagawa et al. 1996

  • synonyms

    @refsynonym
    20215Planomicrobium okeanokoites
    20215Flavobacterium okeanokoites

@ref: 5953

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Caryophanaceae

genus: Planococcus

species: Planococcus okeanokoites

full scientific name: Planococcus okeanokoites (ZoBell and Upham 1944) Nakagawa et al. 1996

type strain: yes

Morphology

cell morphology

  • @ref: 121404
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5953OXOID NUTRIENT BROTH (DSMZ Medium 948)yeshttps://mediadive.dsmz.de/medium/948Name: OXOID NUTRIENT BROTH (DSMZ Medium 948) Composition: Nutrient broth 13.0 g/l Distilled water
5953NUTRIENT AGAR (OXOID CM3) (DSMZ Medium 605)yeshttps://mediadive.dsmz.de/medium/605Name: NUTRIENT AGAR (OXOID CM3) (DSMZ Medium 605) Composition: Agar 15.0 g/l NaCl 5.0 g/l Peptone 5.0 g/l Yeast extract 2.0 g/l Lab-Lemco beef extract 1.0 g/l Distilled water
37967MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
121404CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
5953positivegrowth28mesophilic
5953positivegrowth30mesophilic
37967positivegrowth30mesophilic
49905positivegrowth30mesophilic
121404positivegrowth15-37
121404nogrowth5psychrophilic
121404nogrowth41thermophilic
121404nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 121404
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
121404NaClpositivegrowth2-4 %
121404NaClnogrowth0 %
121404NaClnogrowth6 %
121404NaClnogrowth8 %
121404NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12140416947citrate-carbon source
1214044853esculin-hydrolysis
121404606565hippurate+hydrolysis
12140417632nitrate-builds gas from
12140417632nitrate-reduction
12140416301nitrite-builds gas from
12140416301nitrite-reduction
12140415792malonate-assimilation
12140417234glucose-degradation

antibiotic resistance

  • @ref: 121404
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 121404
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12140415688acetoin-
12140417234glucose-

enzymes

@refvalueactivityec
121404oxidase+
121404beta-galactosidase+3.2.1.23
121404alcohol dehydrogenase-1.1.1.1
121404gelatinase+/-
121404amylase-
121404DNase-
121404caseinase+3.4.21.50
121404catalase+1.11.1.6
121404tween esterase-
121404gamma-glutamyltransferase-2.3.2.2
121404lecithinase-
121404lipase-
121404lysine decarboxylase-4.1.1.18
121404ornithine decarboxylase-4.1.1.17
121404phenylalanine ammonia-lyase-4.3.1.24
121404tryptophan deaminase-
121404urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121404--++-+++---+---+----

Isolation, sampling and environmental information

isolation

@refsample type
5953sea water (marine mud)
49905Sea water
121404Environment, Marine mud

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Terrestrial#Mud (Sludge)

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
59531Risk group (German classification)
1214041Risk group (French classification)

Sequence information

16S sequences

  • @ref: 5953
  • description: Flavobacterium okeanokoites 16S rRNA gene, partial sequence
  • accession: D55729
  • length: 1472
  • database: ena
  • NCBI tax ID: 244

GC content

  • @ref: 5953
  • GC-content: 46.3

External links

@ref: 5953

culture collection no.: DSM 15489, ATCC 33414, CCM 320, CCTM La 3012, CIP 105082, IFO (now NBRC) 12536, LMG 4030, NCIMB 561, VKM B-1175, CCUG 30102, NBRC 12536, IFO 12536

straininfo link

  • @ref: 81181
  • straininfo: 2831

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24854007Planomicrobium soli sp. nov., isolated from soil.Luo X, Zhang J, Li D, Xin Y, Xin D, Fan LInt J Syst Evol Microbiol10.1099/ijs.0.055426-02014Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, Planococcaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny28809140Planococcus ruber sp. nov., isolated from a polluted farmland soil sample.Wang X, Wang Z, Zhao X, Huang X, Zhou Y, Li WJInt J Syst Evol Microbiol10.1099/ijsem.0.0019602017Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, *Farms, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, Planococcus Bacteria/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, *Soil Pollutants, Vitamin K 2/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitle
5953Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15489)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15489
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
37967Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17061
49905Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 30102)https://www.ccug.se/strain?id=30102
68382Automatically annotated from API zym
81181Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID2831.1StrainInfo: A central database for resolving microbial strain identifiers
121404Curators of the CIPCollection of Institut Pasteur (CIP 105082)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105082