Strain identifier
BacDive ID: 11935
Type strain: 
Species: Blastopirellula marina
Strain history: <- H. Schlesner, IFAM
NCBI tax ID(s): 314230 (strain), 124 (species)
version 8.1 (current version)
General
@ref: 1434
BacDive-ID: 11935
DSM-Number: 3645
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Blastopirellula marina DSM 3645 is a mesophilic, Gram-negative bacterium that was isolated from brackish water.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 314230 | strain |
| 124 | species |
strain history
- @ref: 1434
- history: <- H. Schlesner, IFAM
doi: 10.13145/bacdive11935.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/planctomycetota
- domain: Bacteria
- phylum: Planctomycetota
- class: Planctomycetia
- order: Pirellulales
- family: Pirellulaceae
- genus: Blastopirellula
- species: Blastopirellula marina
- full scientific name: Blastopirellula marina (Schlesner 1987) Schlesner et al. 2004
synonyms
@ref synonym 20215 Pirellula marina 20215 Pirella marina
@ref: 1434
domain: Bacteria
phylum: Planctomycetes
class: Planctomycetia
order: Planctomycetales
family: Pirellulaceae
genus: Blastopirellula
species: Blastopirellula marina
full scientific name: Blastopirellula marina (Schlesner 1987) Schlesner et al. 2004 emend. Hahnke et al. 2016
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.995
Culture and growth conditions
culture medium
- @ref: 1434
- name: M14 (PIRELLULA MARINA) MEDIUM (DSMZ Medium 600)
- growth: yes
- link: https://mediadive.dsmz.de/medium/600
- composition: Name: M14 (PIRELLULA MARINA) MEDIUM (DSMZ Medium 600) Composition: NaCl 5.8675 g/l MgCl2 x 6 H2O 2.66 g/l Glucose 1.0 g/l Yeast extract 1.0 g/l Na2SO4 0.98 g/l MgSO4 x 7 H2O 0.594 g/l CaCl2 0.275 g/l Nitrilotriacetic acid 0.2 g/l KCl 0.166 g/l CaCl2 x 2 H2O 0.0667 g/l NaHCO3 0.048 g/l KBr 0.024 g/l H3BO3 0.0065 g/l SrCl2 0.006 g/l ZnSO4 x 7 H2O 0.001095 g/l NaF 0.00075 g/l FeSO4 x 7 H2O 0.0005 g/l Na-EDTA 0.00025 g/l (NH4)6Mo7O24 x 4 H2O 0.000185 g/l MnSO4 x H2O 0.000154 g/l Nicotinamide 9e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Calcium pantothenate 5e-05 g/l Riboflavin 5e-05 g/l CuSO4 x 5 H2O 3.92e-05 g/l Co(NO3)2 x 6 H2O 2.48e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Na2B4O7 x 10 H2O 1.77e-05 g/l Vitamin B12 1e-06 g/l Tris-HCl buffer Distilled water
culture temp
- @ref: 1434
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.997 |
Isolation, sampling and environmental information
isolation
- @ref: 1434
- sample type: brackish water
- geographic location: Baltic Sea
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Brackish
taxonmaps
- @ref: 69479
- File name: preview.99_5883.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_544;96_2817;97_3461;98_4375;99_5883&stattab=map
- Last taxonomy: Blastopirellula marina
- 16S sequence: NR_117648
- Sequence Identity:
- Total samples: 1207
- soil counts: 331
- aquatic counts: 788
- animal counts: 50
- plant counts: 38
Safety information
risk assessment
- @ref: 1434
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Blastopirellula marina partial 16S rRNA gene, type strain DSM 3645T | HE861893 | 1501 | ena | 124 |
| 20218 | P.marina 16S rDNA | X62912 | 1503 | ena | 314230 |
| 1434 | Blastopirellula marina strain DSM 3645 16S ribosomal RNA, partial sequence | NR_117648 | 1501 | nuccore | 124 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Blastopirellula marina DSM 3645 | GCA_000153105 | scaffold | ncbi | 314230 |
| 66792 | Blastopirellula marina DSM 3645 | 314230.4 | wgs | patric | 314230 |
| 66792 | Blastopirellula marina DSM 3645 | 638341020 | draft | img | 314230 |
GC content
- @ref: 1434
- GC-content: 57.0
- method: sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 81.135 | no |
| flagellated | no | 82.787 | no |
| gram-positive | no | 97.729 | no |
| anaerobic | no | 97.644 | no |
| aerobic | yes | 91.366 | no |
| halophile | no | 64.375 | no |
| spore-forming | no | 89.847 | no |
| thermophile | no | 94.774 | no |
| glucose-util | yes | 88.785 | no |
| glucose-ferment | no | 90.454 | no |
External links
@ref: 1434
culture collection no.: DSM 3645, ATCC 49069, IFAM 1313
straininfo link
- @ref: 81149
- straininfo: 42276
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 15388712 | Taxonomic heterogeneity within the Planctomycetales as derived by DNA-DNA hybridization, description of Rhodopirellula baltica gen. nov., sp. nov., transfer of Pirellula marina to the genus Blastopirellula gen. nov. as Blastopirellula marina comb. nov. and emended description of the genus Pirellula. | Schlesner H, Rensmann C, Tindall BJ, Gade D, Rabus R, Pfeiffer S, Hirsch P | Int J Syst Evol Microbiol | 10.1099/ijs.0.63113-0 | 2004 | Bacteria/*classification/cytology/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics/isolation & purification, Fatty Acids/analysis/isolation & purification, Movement, Nucleic Acid Hybridization, Pigments, Biological/biosynthesis, Water Microbiology | Enzymology |
| Genetics | 18043661 | Fosmids of novel marine Planctomycetes from the Namibian and Oregon coast upwelling systems and their cross-comparison with planctomycete genomes. | Woebken D, Teeling H, Wecker P, Dumitriu A, Kostadinov I, Delong EF, Amann R, Glockner FO | ISME J | 10.1038/ismej.2007.63 | 2007 | Atlantic Ocean, Bacteria/classification/enzymology/*genetics, *Genome, Bacterial, Genomic Library, Genomics, Namibia, Oregon, Pacific Ocean, Phylogeny, Seawater/*microbiology, Sulfatases/genetics | Phylogeny |
| Phylogeny | 23159757 | Blastopirellula cremea sp. nov., isolated from a dead ark clam. | Lee HW, Roh SW, Shin NR, Lee J, Whon TW, Jung MJ, Yun JH, Kim MS, Hyun DW, Kim D, Bae JW | Int J Syst Evol Microbiol | 10.1099/ijs.0.044099-0 | 2012 | Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, *Phylogeny, Planctomycetales/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Republic of Korea, Scapharca/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis | Genetics |
| 23766281 | Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry for the identification of environmental organisms: the Planctomycetes paradigm. | Cayrou C, Raoult D, Drancourt M | Environ Microbiol Rep | 10.1111/j.1758-2229.2010.00176.x | 2010 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1434 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3645) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3645 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 81149 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID42276.1 | StrainInfo: A central database for resolving microbial strain identifiers |