Strain identifier
BacDive ID: 1193
Type strain: 
Species: Bacillus spizizenii
Strain Designation: TU-B-10
Strain history: NRRL B-23049 <-- F. M. Cohan TU-B-10.
NCBI tax ID(s): 96241 (species)
version 7.1 (current version)
General
@ref: 5680
BacDive-ID: 1193
DSM-Number: 15029
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, human pathogen
description: Bacillus spizizenii TU-B-10 is a mesophilic human pathogen that was isolated from tunisian desert.
NCBI tax id
- NCBI tax id: 96241
- Matching level: species
strain history
doi: 10.13145/bacdive1193.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus spizizenii
- full scientific name: Bacillus spizizenii (Nakamura et al. 1999) Dunlap et al. 2020
synonyms
- @ref: 20215
- synonym: Bacillus subtilis subsp. spizizenii
@ref: 5680
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus spizizenii
full scientific name: Bacillus spizizenii (Nakamura et al. 1999) Dunlap et al. 2020
strain designation: TU-B-10
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 86.698 | |
| 69480 | 95.464 | positive |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 5680 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| 39469 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 5680 | positive | growth | 30 | mesophilic |
| 39469 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 97.194
halophily
- @ref: 69480
- halophily level: non-halophilic
- confidence: 16.282
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 5680 | tunisian desert | Tunisia | TUN | Africa |
| 67770 | Tunisian desert |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Desert
taxonmaps
- @ref: 69479
- File name: preview.99_21.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_17;97_17;98_20;99_21&stattab=map
- Last taxonomy: Bacillus
- 16S sequence: AF074970
- Sequence Identity:
- Total samples: 18201
- soil counts: 3768
- aquatic counts: 2854
- animal counts: 9674
- plant counts: 1905
Safety information
risk assessment
- @ref: 5680
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Bacillus subtilis subsp. spizizenii strain BCRC 17366 16S ribosomal RNA gene, partial sequence | EF433402 | 1468 | ena | 96241 |
| 20218 | Bacillus subtilis subsp. spizizenii gene for 16S rRNA, partial sequence, strain: NBRC 101239 | AB325584 | 1475 | ena | 96241 |
| 20218 | Bacillus subtilis subsp. spizizenii 16S ribosomal RNA gene, partial sequence | AF074970 | 1409 | ena | 96241 |
| 20218 | Bacillus subtilis subsp. spizizenii strain NRRL B-23049 16S ribosomal RNA gene, partial sequence | EU138464 | 1168 | ena | 96241 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bacillus spizizenii NBRC 101239 | GCA_007989785 | contig | ncbi | 96241 |
| 66792 | Bacillus subtilis subsp. spizizenii strain NBRC 101239 | 96241.37 | wgs | patric | 96241 |
| 66792 | Bacillus subtilis spizizenii TU-B-10, DSM 15029 | 2511231064 | complete | img | 1052585 |
| 67770 | Bacillus subtilis subsp. spizizenii TU-B-10, complete genome | CP002905 | ena | 1052585 |
External links
@ref: 5680
culture collection no.: DSM 15029, NRRL B-23049, JCM 12233, CIP 106094, LMG 19156, NBRC 101239
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/302014 |
| 20218 | http://www.straininfo.net/strains/56121 |
literature
- topic: Phylogeny
- Pubmed-ID: 32939598
- title: Bacillus rugosus sp. nov. producer of a diketopiperazine antimicrobial, isolated from marine sponge Spongia officinalis L.
- authors: Bhattacharya D, de Los Santos Villalobos S, Ruiz VV, Selvin J, Mukherjee J
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-020-01472-9
- year: 2020
- mesh: Animals, Anti-Infective Agents/*metabolism, Bacillus/classification/genetics/*isolation & purification/*metabolism, Bacterial Typing Techniques, DNA, Bacterial/genetics, Diketopiperazines/*metabolism, Lipids/analysis, Phylogeny, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 5680 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15029) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15029 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 39469 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/18185 | ||||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |