Strain identifier
BacDive ID: 119
Type strain: 
Species: Acidithiobacillus ferrivorans
Strain Designation: SS3
Strain history: <- M. Dopson, Dept. Molecular Biology, Umeå Univ., Sweden; SS3 <- D. Kupka {2004}
NCBI tax ID(s): 160808 (species)
version 8.1 (current version)
General
@ref: 6950
BacDive-ID: 119
DSM-Number: 17398
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Acidithiobacillus ferrivorans SS3 is a mesophilic bacterium that was isolated from sediment sample.
NCBI tax id
- NCBI tax id: 160808
- Matching level: species
strain history
- @ref: 6950
- history: <- M. Dopson, Dept. Molecular Biology, Umeå Univ., Sweden; SS3 <- D. Kupka {2004}
doi: 10.13145/bacdive119.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Acidithiobacillia
- order: Acidithiobacillales
- family: Acidithiobacillaceae
- genus: Acidithiobacillus
- species: Acidithiobacillus ferrivorans
- full scientific name: Acidithiobacillus ferrivorans Hallberg et al. 2010
@ref: 6950
domain: Bacteria
phylum: Proteobacteria
class: Acidithiobacillia
order: Acidithiobacillales
family: Acidithiobacillaceae
genus: Acidithiobacillus
species: Acidithiobacillus ferrivorans
full scientific name: Acidithiobacillus ferrivorans Hallberg et al. 2010
strain designation: SS3
type strain: no
Morphology
colony morphology
- @ref: 6950
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 6950
- name: LEPTOSPIRILLUM (HH) MEDIUM (DSMZ Medium 882)
- growth: yes
- link: https://mediadive.dsmz.de/medium/882
- composition: Name: LEPTOSPIRILLUM (HH) MEDIUM (DSMZ Medium 882) Composition: FeSO4 x 7 H2O 19.98 g/l CaCl2 x 2 H2O 0.146853 g/l (NH4)2SO4 0.131868 g/l MgCl2 x 6 H2O 0.0529471 g/l KH2PO4 0.0269731 g/l MnCl2 x 4 H2O 7.59241e-05 g/l ZnCl2 6.79321e-05 g/l CuCl2 x 2 H2O 6.69331e-05 g/l CoCl2 x 6 H2O 6.39361e-05 g/l H3BO3 3.0969e-05 g/l Na2MoO4 9.99001e-06 g/l H2SO4 Distilled water
culture temp
- @ref: 6950
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 6950
- sample type: sediment sample
- geographic location: Taimyr, Norilsk Industrial Area, copper-nickel mining area
- country: Russia
- origin.country: RUS
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Sediment |
| #Environmental | #Aquatic | #Sediment |
Safety information
risk assessment
- @ref: 6950
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6950
- description: Acidithiobacillus ferrivorans SS3 strain SS3 16S ribosomal RNA, complete sequence
- accession: NR_074660
- length: 1524
- database: nuccore
- NCBI tax ID: 743299
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acidithiobacillus ferrivorans SS3 | GCA_000214095 | complete | ncbi | 743299 |
| 66792 | Acidithiobacillus ferrivorans SS3 | 743299.4 | wgs | patric | 743299 |
| 66792 | Acidithiobacillus ferrivorans SS3 | 2510436001 | complete | img | 743299 |
GC content
- @ref: 6950
- GC-content: 56.6
- method: sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 74.958 | no |
| flagellated | no | 97.359 | no |
| gram-positive | no | 96.949 | no |
| anaerobic | no | 96.24 | no |
| aerobic | no | 74.186 | no |
| halophile | no | 87.979 | no |
| spore-forming | no | 94.353 | no |
| thermophile | no | 98.94 | yes |
| glucose-util | yes | 52.826 | no |
| glucose-ferment | no | 86.844 | no |
External links
@ref: 6950
culture collection no.: DSM 17398
straininfo link
- @ref: 69802
- straininfo: 406995
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 6950 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17398) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17398 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69802 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID406995.1 | StrainInfo: A central database for resolving microbial strain identifiers |