Strain identifier

BacDive ID: 11899

Type strain: Yes

Species: Aliihoeflea aestuarii

Strain Designation: N8

Strain history: S. W. Roh N8.

NCBI tax ID(s): 453840 (species)

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General

@ref: 8157

BacDive-ID: 11899

DSM-Number: 19536

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Aliihoeflea aestuarii N8 is a mesophilic bacterium that was isolated from tidal flat sediment.

NCBI tax id

  • NCBI tax id: 453840
  • Matching level: species

strain history

@refhistory
8157<- S. W. Roh, Korea Res. Inst. Biosci. & Biotechnol. (KRIBB), Taejon, South Korea; N8
67770S. W. Roh N8.

doi: 10.13145/bacdive11899.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Phyllobacteriaceae
  • genus: Aliihoeflea
  • species: Aliihoeflea aestuarii
  • full scientific name: Aliihoeflea aestuarii Roh et al. 2008

@ref: 8157

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Phyllobacteriaceae

genus: Aliihoeflea

species: Aliihoeflea aestuarii

full scientific name: Aliihoeflea aestuarii Roh et al. 2008

strain designation: N8

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 8157
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8157positivegrowth28mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: Q-10

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentlatitudelongitude
8157tidal flat sedimentRepublic of KoreaKORAsia
67770Tidal flat sediment in Yeosu (34° 47' 26" N 127° 34' 01" E)Republic of KoreaKORAsia34.7906127.567

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Tidal flat
#Environmental#Terrestrial#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_5523.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_2669;97_3276;98_4123;99_5523&stattab=map
  • Last taxonomy: Aliihoeflea aestuarii subclade
  • 16S sequence: EF660756
  • Sequence Identity:
  • Total samples: 1552
  • soil counts: 401
  • aquatic counts: 292
  • animal counts: 713
  • plant counts: 146

Sequence information

16S sequences

  • @ref: 8157
  • description: Aliihoeflea aestuarii strain N8 16S ribosomal RNA gene, partial sequence
  • accession: EF660756
  • length: 1453
  • database: ena
  • NCBI tax ID: 453840

Genome sequences

  • @ref: 66792
  • description: Aliihoeflea aestuarii JCM 15118
  • accession: GCA_024105665
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 453840

GC content

  • @ref: 67770
  • GC-content: 53.4
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno79.106no
gram-positiveno97.699no
anaerobicno96.001no
aerobicyes94.097no
halophileno82.49no
spore-formingno96.368no
motileyes79.123no
glucose-fermentno92.664no
thermophileno97.524yes
glucose-utilyes90.029no

External links

@ref: 8157

culture collection no.: DSM 19536, JCM 15118, KCTC 22052

literature

  • topic: Phylogeny
  • Pubmed-ID: 18974964
  • title: Aliihoeflea aestuarii gen. nov., sp. nov., a novel bacterium isolated from tidal flat sediment.
  • authors: Roh SW, Kim KH, Nam YD, Chang HW, Kim MS, Shin KS, Yoon JH, Oh HM, Bae JW
  • journal: J Microbiol
  • DOI: 10.1007/s12275-008-0196-x
  • year: 2008
  • mesh: Alphaproteobacteria/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitle
8157Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19536)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19536
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta