Strain identifier
BacDive ID: 11899
Type strain:
Species: Aliihoeflea aestuarii
Strain Designation: N8
Strain history: S. W. Roh N8.
NCBI tax ID(s): 453840 (species)
version 8.1 (current version)
General
@ref: 8157
BacDive-ID: 11899
DSM-Number: 19536
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Aliihoeflea aestuarii N8 is a mesophilic bacterium that was isolated from tidal flat sediment.
NCBI tax id
- NCBI tax id: 453840
- Matching level: species
strain history
@ref | history |
---|---|
8157 | <- S. W. Roh, Korea Res. Inst. Biosci. & Biotechnol. (KRIBB), Taejon, South Korea; N8 |
67770 | S. W. Roh N8. |
doi: 10.13145/bacdive11899.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Phyllobacteriaceae
- genus: Aliihoeflea
- species: Aliihoeflea aestuarii
- full scientific name: Aliihoeflea aestuarii Roh et al. 2008
@ref: 8157
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Phyllobacteriaceae
genus: Aliihoeflea
species: Aliihoeflea aestuarii
full scientific name: Aliihoeflea aestuarii Roh et al. 2008
strain designation: N8
type strain: yes
Culture and growth conditions
culture medium
- @ref: 8157
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8157 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-10
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | latitude | longitude |
---|---|---|---|---|---|---|
8157 | tidal flat sediment | Republic of Korea | KOR | Asia | ||
67770 | Tidal flat sediment in Yeosu (34° 47' 26" N 127° 34' 01" E) | Republic of Korea | KOR | Asia | 34.7906 | 127.567 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Tidal flat |
#Environmental | #Terrestrial | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_5523.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_2669;97_3276;98_4123;99_5523&stattab=map
- Last taxonomy: Aliihoeflea aestuarii subclade
- 16S sequence: EF660756
- Sequence Identity:
- Total samples: 1552
- soil counts: 401
- aquatic counts: 292
- animal counts: 713
- plant counts: 146
Sequence information
16S sequences
- @ref: 8157
- description: Aliihoeflea aestuarii strain N8 16S ribosomal RNA gene, partial sequence
- accession: EF660756
- length: 1453
- database: ena
- NCBI tax ID: 453840
Genome sequences
- @ref: 66792
- description: Aliihoeflea aestuarii JCM 15118
- accession: GCA_024105665
- assembly level: contig
- database: ncbi
- NCBI tax ID: 453840
GC content
- @ref: 67770
- GC-content: 53.4
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 79.106 | no |
gram-positive | no | 97.699 | no |
anaerobic | no | 96.001 | no |
aerobic | yes | 94.097 | no |
halophile | no | 82.49 | no |
spore-forming | no | 96.368 | no |
motile | yes | 79.123 | no |
glucose-ferment | no | 92.664 | no |
thermophile | no | 97.524 | yes |
glucose-util | yes | 90.029 | no |
External links
@ref: 8157
culture collection no.: DSM 19536, JCM 15118, KCTC 22052
literature
- topic: Phylogeny
- Pubmed-ID: 18974964
- title: Aliihoeflea aestuarii gen. nov., sp. nov., a novel bacterium isolated from tidal flat sediment.
- authors: Roh SW, Kim KH, Nam YD, Chang HW, Kim MS, Shin KS, Yoon JH, Oh HM, Bae JW
- journal: J Microbiol
- DOI: 10.1007/s12275-008-0196-x
- year: 2008
- mesh: Alphaproteobacteria/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology
- topic2: Metabolism
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
8157 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19536) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19536 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |