Strain identifier

BacDive ID: 11895

Type strain: Yes

Species: Mesorhizobium shangrilense

Strain history: <- X. Sui, China Agric. Univ., College Biol. Sci., Beijing <- Y. L. Lu et al.

NCBI tax ID(s): 460060 (species)

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General

@ref: 15989

BacDive-ID: 11895

DSM-Number: 21850

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Mesorhizobium shangrilense DSM 21850 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from root nodules of Caragana bicolor.

NCBI tax id

  • NCBI tax id: 460060
  • Matching level: species

strain history

  • @ref: 15989
  • history: <- X. Sui, China Agric. Univ., College Biol. Sci., Beijing <- Y. L. Lu et al.

doi: 10.13145/bacdive11895.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Phyllobacteriaceae
  • genus: Mesorhizobium
  • species: Mesorhizobium shangrilense
  • full scientific name: Mesorhizobium shangrilense Lu et al. 2009

@ref: 15989

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Phyllobacteriaceae

genus: Mesorhizobium

species: Mesorhizobium shangrilense

full scientific name: Mesorhizobium shangrilense Lu et al. 2009

type strain: yes

Morphology

cell morphology

  • @ref: 29149
  • gram stain: negative
  • cell length: 2 µm
  • cell width: 0.45 µm
  • cell shape: rod-shaped

pigmentation

  • @ref: 29149
  • production: no

Culture and growth conditions

culture medium

  • @ref: 15989
  • name: YMA-MEDIUM (MODIFIED) (DSMZ Medium 1031a)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1031a
  • composition: Name: YMA-MEDIUM (modified) (DSMZ Medium 1031a) Composition: Agar 20.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l K2HPO4 0.5 g/l Na glutamate 0.5 g/l MgSO4 x 7 H2O 0.1 g/l CaCl2 x 2 H2O 0.0528 g/l NaCl 0.05 g/l FeCl3 x 6 H2O 0.00666 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
15989positivegrowth28mesophilic
29149positivegrowth10-37
29149positiveoptimum28mesophilic

culture pH

@refabilitytypepHPH range
29149positivegrowth05-10alkaliphile
29149positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 29149
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29149
  • spore formation: no

halophily

  • @ref: 29149
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 02-03 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2914922599arabinose+carbon source
2914929016arginine+carbon source
2914935391aspartate+carbon source
2914916947citrate+carbon source
2914928757fructose+carbon source
2914917234glucose+carbon source
2914929987glutamate+carbon source
29149182404-hydroxy-L-proline+carbon source
2914925115malate+carbon source
2914917306maltose+carbon source
2914937684mannose+carbon source
2914928044phenylalanine+carbon source
2914926546rhamnose+carbon source
2914930911sorbitol+carbon source
2914930031succinate+carbon source
2914917992sucrose+carbon source
2914926986threonine+carbon source
2914927082trehalose+carbon source
2914918222xylose+carbon source

metabolite production

  • @ref: 29149
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 29149
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
29149catalase+1.11.1.6
29149cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 15989
  • sample type: root nodules of Caragana bicolor
  • host species: Caragana bicolor
  • geographic location: Yunnan province, Deqin city
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Tree
#Host Body-Site#Plant#Root nodule

taxonmaps

  • @ref: 69479
  • File name: preview.99_809.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_220;97_239;98_643;99_809&stattab=map
  • Last taxonomy: Mesorhizobium
  • 16S sequence: EU074203
  • Sequence Identity:
  • Total samples: 30688
  • soil counts: 18576
  • aquatic counts: 5652
  • animal counts: 4689
  • plant counts: 1771

Safety information

risk assessment

  • @ref: 15989
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15989
  • description: Mesorhizobium shangrilense strain CCBAU 65327 16S ribosomal RNA gene, partial sequence
  • accession: EU074203
  • length: 1344
  • database: ena
  • NCBI tax ID: 460060

GC content

  • @ref: 15989
  • GC-content: 61.37

External links

@ref: 15989

culture collection no.: DSM 21850, CCBAU 65327, HAMBI 3050, LMG 24762

straininfo link

  • @ref: 81112
  • straininfo: 364838

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19643905Mesorhizobium shangrilense sp. nov., isolated from root nodules of Caragana species.Lu YL, Chen WF, Wang ET, Han LL, Zhang XX, Chen WX, Han SZInt J Syst Evol Microbiol10.1099/ijs.0.007393-02009Alphaproteobacteria/*classification/genetics/*isolation & purification, Caragana/*microbiology, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiologyGenetics
Phylogeny23315406Mesorhizobium sangaii sp. nov., isolated from the root nodules of Astragalus luteolus and Astragalus ernestii.Zhou S, Li Q, Jiang H, Lindstrom K, Zhang XInt J Syst Evol Microbiol10.1099/ijs.0.044685-02013Astragalus Plant/*microbiology, Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Genes, Bacterial, Mesorhizobium/*classification/genetics/isolation & purification, Molecular Sequence Data, Nitrogen Fixation, Nucleic Acid Hybridization, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, SymbiosisGenetics
Phylogeny26296780Mesorhizobium waimense sp. nov. isolated from Sophora longicarinata root nodules and Mesorhizobium cantuariense sp. nov. isolated from Sophora microphylla root nodules.De Meyer SE, Wee Tan H, Heenan PB, Andrews M, Willems AInt J Syst Evol Microbiol10.1099/ijsem.0.0004302015Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Mesorhizobium/*classification/genetics/isolation & purification, Molecular Sequence Data, New Zealand, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, Sophora/*microbiologyGenetics
Phylogeny32564274Mesorhizobium terrae sp. nov., a novel species isolated from soil in Jangsu, Korea.Jung YJ, Kim HJ, Hur MAntonie Van Leeuwenhoek10.1007/s10482-020-01435-02020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, High-Throughput Nucleotide Sequencing, Mesorhizobium/*classification/isolation & purification/*physiology, Molecular Typing, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, *Soil Microbiology, Ubiquinone/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
15989Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21850)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21850
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29149Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2557328776041
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
81112Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID364838.1StrainInfo: A central database for resolving microbial strain identifiers