Strain identifier
BacDive ID: 11894
Type strain: 
Species: Mesorhizobium albiziae
Strain history: <- X. Sui, China Agric. Univ., College Biol. Sci., Beijing; CCBAU 61158 <- Q. Chen et al.
NCBI tax ID(s): 1122227 (strain), 335020 (species)
version 8.1 (current version)
General
@ref: 15971
BacDive-ID: 11894
DSM-Number: 21822
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Mesorhizobium albiziae DSM 21822 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from root nodule of Albizia kalkora.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1122227 | strain |
| 335020 | species |
strain history
- @ref: 15971
- history: <- X. Sui, China Agric. Univ., College Biol. Sci., Beijing; CCBAU 61158 <- Q. Chen et al.
doi: 10.13145/bacdive11894.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Phyllobacteriaceae
- genus: Mesorhizobium
- species: Mesorhizobium albiziae
- full scientific name: Mesorhizobium albiziae Wang et al. 2007
@ref: 15971
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Phyllobacteriaceae
genus: Mesorhizobium
species: Mesorhizobium albiziae
full scientific name: Mesorhizobium albiziae Wang et al. 2007
type strain: yes
Morphology
cell morphology
- @ref: 31815
- gram stain: negative
- cell length: 01-03 µm
- cell width: 0.3-0.5 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 31815
- production: no
Culture and growth conditions
culture medium
- @ref: 15971
- name: YMA-MEDIUM (MODIFIED) (DSMZ Medium 1031a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1031a
- composition: Name: YMA-MEDIUM (modified) (DSMZ Medium 1031a) Composition: Agar 20.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l K2HPO4 0.5 g/l Na glutamate 0.5 g/l MgSO4 x 7 H2O 0.1 g/l CaCl2 x 2 H2O 0.0528 g/l NaCl 0.05 g/l FeCl3 x 6 H2O 0.00666 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 15971 | positive | growth | 28 | mesophilic |
| 31815 | positive | optimum | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 31815
- oxygen tolerance: aerobe
spore formation
- @ref: 31815
- spore formation: no
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31815 | 28757 | fructose | + | carbon source |
| 31815 | 17716 | lactose | + | carbon source |
| 31815 | 25115 | malate | + | carbon source |
| 31815 | 17306 | maltose | + | carbon source |
| 31815 | 28053 | melibiose | + | carbon source |
| 31815 | 16634 | raffinose | + | carbon source |
| 31815 | 17992 | sucrose | + | carbon source |
| 31815 | 18222 | xylose | + | carbon source |
Isolation, sampling and environmental information
isolation
- @ref: 15971
- sample type: root nodule of Albizia kalkora
- host species: Albizia kalkora
- geographic location: Sichuan Province (subtropical region)
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Tree |
| #Host Body-Site | #Plant | #Root nodule |
Safety information
risk assessment
- @ref: 15971
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Mesorhizobium albiziae 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequence | JQ013894 | 879 | ena | 335020 |
| 15971 | Mesorhizobium albiziae strain CCBAU 61158 16S ribosomal RNA gene, partial sequence | DQ100066 | 1399 | ena | 335020 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mesorhizobium albiziae DSM 21822 | GCA_900114255 | scaffold | ncbi | 335020 |
| 66792 | Mesorhizobium albiziae strain DSM 21822 | 335020.4 | wgs | patric | 335020 |
| 66792 | Mesorhizobium albiziae DSM 21822 | 2616644812 | draft | img | 1122227 |
GC content
- @ref: 15971
- GC-content: 59
External links
@ref: 15971
culture collection no.: DSM 21822, CCBAU 61158, LMG 23507, USDA 4964
straininfo link
- @ref: 81111
- straininfo: 293842
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 17551028 | Mesorhizobium albiziae sp. nov., a novel bacterium that nodulates Albizia kalkora in a subtropical region of China. | Wang FQ, Wang ET, Liu J, Chen Q, Sui XH, Chen WF, Chen WX | Int J Syst Evol Microbiol | 10.1099/ijs.0.64363-0 | 2007 | Albizzia/*microbiology, Alphaproteobacteria/chemistry/*classification/genetics/*isolation & purification, Bacterial Proteins/analysis/genetics, Bacterial Typing Techniques, China, Electrophoresis, Polyacrylamide Gel, Fatty Acids/analysis, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/genetics, Peptide Mapping, Phylogeny, Polymorphism, Restriction Fragment Length, Proteome/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid | Enzymology |
| Phylogeny | 34214029 | Mesorhizobium microcysteis sp. nov., isolated from a culture of Microcystis aeruginosa. | Jung J, Seo YL, Kim KR, Park HY, Jeon CO | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004847 | 2021 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Mesorhizobium/*classification/isolation & purification, *Microcystis, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
|---|---|---|---|---|---|---|---|
| 15971 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21822) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21822 | ||||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
| 31815 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28776041 | 28083 | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 81111 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID293842.1 | StrainInfo: A central database for resolving microbial strain identifiers |