Strain identifier

BacDive ID: 11889

Type strain: Yes

Species: Mesorhizobium tianshanense

Strain Designation: A-1BST, A-1BS

Strain history: CIP <- 1998, W. Chen, Beijing, China: strain A-1BS

NCBI tax ID(s): 39844 (species)

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General

@ref: 4355

BacDive-ID: 11889

DSM-Number: 11417

keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped

description: Mesorhizobium tianshanense A-1BST is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from root nodule of Glycyrrhiza pallidiflora.

NCBI tax id

  • NCBI tax id: 39844
  • Matching level: species

strain history

@refhistory
4355<- K. Lindström <- E. T. Wang, A-1BST
67770IAM 15106 <-- LMG 18976 <-- P. de Lajudie R-2258 <-- LMG 15767 <-- HAMBI 1870 <-- CCBAU 3306.
123545CIP <- 1998, W. Chen, Beijing, China: strain A-1BS

doi: 10.13145/bacdive11889.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Phyllobacteriaceae
  • genus: Mesorhizobium
  • species: Mesorhizobium tianshanense
  • full scientific name: Mesorhizobium tianshanense (Chen et al. 1995) Jarvis et al. 1997

  • synonyms

    • @ref: 20215
    • synonym: Rhizobium tianshanense

@ref: 4355

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Phyllobacteriaceae

genus: Mesorhizobium

species: Mesorhizobium tianshanense

full scientific name: Mesorhizobium tianshanense (Chen et al. 1995) Jarvis et al. 1997

strain designation: A-1BST, A-1BS

type strain: yes

Morphology

cell morphology

  • @ref: 123545
  • gram stain: negative
  • cell shape: rod-shaped

colony morphology

  • @ref: 123545

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
38557MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffiiyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g)
123545CIP Medium 1yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=1

culture temp

@refgrowthtypetemperaturerange
38557positivegrowth30mesophilic
67770positivegrowth28mesophilic
123545positivegrowth25-30mesophilic
123545nogrowth10psychrophilic
123545nogrowth37mesophilic
123545nogrowth41thermophilic
123545nogrowth45thermophilic

Physiology and metabolism

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol+builds acid from18403
68371D-arabitol+builds acid from18333
68371L-fucose+builds acid from18287
68371D-fucose+builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose+builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose+builds acid from28053
68371maltose-builds acid from17306
68371salicin-builds acid from17814
68371esculin+builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose+builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol+builds acid from15963
68371L-xylose+builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose+builds acid from17108
123545citrate-carbon source16947
123545esculin-hydrolysis4853
123545hippurate-hydrolysis606565
123545nitrate-reduction17632
123545nitrite-reduction16301

metabolite production

  • @ref: 123545
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12354515688acetoin-
12354517234glucose+

enzymes

@refvalueactivityec
123545oxidase+
123545beta-galactosidase-3.2.1.23
123545alcohol dehydrogenase-1.1.1.1
123545gelatinase-
123545catalase-1.11.1.6
123545gamma-glutamyltransferase+2.3.2.2
123545lysine decarboxylase-4.1.1.18
123545ornithine decarboxylase-4.1.1.17
123545phenylalanine ammonia-lyase-4.3.1.24
123545tryptophan deaminase-
123545urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123545-+++-+--+-+----+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
123545+/-+/-++++++-++++-+------+/---+-+/--+/-+--------+-+-++++---

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123545++++++++++++++++++++++++++++++++++++++-+-+++++++++-++-++++-++---+-----++-+-+---++-+-+-+-++++-+-++++

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
4355root nodule of Glycyrrhiza pallidifloraGlycyrrhiza pallidifloraXinjiangChinaCHNAsia
67770Glycyrrhiza pallidifloraGlycyrrhiza pallidifloraXinjiangChinaCHNAsia
123545Glycyrrhiza pallidifloraXinjiangChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root nodule

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
43551Risk group (German classification)
1235451Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Mesorhizobium tianshanense 16S-23S ribosomal RNA intergenic spacer regionAF325826784ena39844
20218Rhizobium tianshanense 16S ribosomal RNA gene, partial sequenceU710791448ena39844
20218Mesorhizobium tianshanense gene for 16S rRNA, partial sequence, strain: NBRC 102499AB6818361410ena39844
20218Mesorhizobium tianshanense 16S ribosomal RNA gene, complete sequenceAF0414471476ena39844
20218Mesorhizobium tianshanense strain USDA 3592 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA, partial sequenceAF345264802ena39844

External links

@ref: 4355

culture collection no.: DSM 11417, HAMBI 1870, JCM 21567, CCBAU 3306, CIP 105502, IAM 15106, LMG 15767, LMG 16347, LMG 18976, NBRC 102499

straininfo link

  • @ref: 81106
  • straininfo: 12938

literature

  • topic: Phylogeny
  • Pubmed-ID: 28693668
  • title: Mesorhizobium helmanticense sp. nov., isolated from Lotus corniculatus nodules.
  • authors: Marcos-Garcia M, Menendez E, Ramirez-Bahena MH, Mateos PF, Peix A, Velazquez E, Rivas R
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001942
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lotus/*microbiology, Mesorhizobium/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, Spain, Symbiosis
  • topic2: Transcriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4355Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11417)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11417
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38557Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17528
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
81106Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID12938.1StrainInfo: A central database for resolving microbial strain identifiers
123545Curators of the CIPCollection of Institut Pasteur (CIP 105502)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105502