Strain identifier

BacDive ID: 11888

Type strain: Yes

Species: Mesorhizobium mediterraneum

Strain Designation: UPM-Ca 36

Strain history: CIP <- 2002, P. De Lajudie, Montpellier, France: strain ORS 2739T <- LMG

NCBI tax ID(s): 43617 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 4417

BacDive-ID: 11888

DSM-Number: 11555

keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped

description: Mesorhizobium mediterraneum UPM-Ca 36 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from chickpea nodules.

NCBI tax id

  • NCBI tax id: 43617
  • Matching level: species

strain history

@refhistory
4417<- S. M. Nour, UPM-Ca 36 <- T. Ruiz-Argueso
67770IAM 15104 <-- LMG 17148 <-- M. P. Fernandez <-- T. Ruiz-Argueso UPM-Ca36.
120878CIP <- 2002, P. De Lajudie, Montpellier, France: strain ORS 2739T <- LMG

doi: 10.13145/bacdive11888.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Phyllobacteriaceae
  • genus: Mesorhizobium
  • species: Mesorhizobium mediterraneum
  • full scientific name: Mesorhizobium mediterraneum (Nour et al. 1995) Jarvis et al. 1997

  • synonyms

    • @ref: 20215
    • synonym: Rhizobium mediterraneum

@ref: 4417

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Phyllobacteriaceae

genus: Mesorhizobium

species: Mesorhizobium mediterraneum

full scientific name: Mesorhizobium mediterraneum (Nour et al. 1995) Jarvis et al. 1997

strain designation: UPM-Ca 36

type strain: yes

Morphology

cell morphology

  • @ref: 120878
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 120878

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4417RHIZOBIUM MEDIUM (DSMZ Medium 98)yeshttps://mediadive.dsmz.de/medium/98Name: RHIZOBIUM MEDIUM (DSMZ Medium 98) Composition: air-dried garden soil 80.0 g/l Agar 15.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l Na2CO3 0.2 g/l Distilled water
33769MEDIUM 296 - for RhizobiumyesDistilled water make up to (800.000 ml);Agar (15.000 g);Yeast extract (1.000 g);Mannitol (10.000 g);Earth extract - M0541 (200.000 ml)
120878CIP Medium 296yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=296

culture temp

@refgrowthtypetemperaturerange
4417positivegrowth30mesophilic
33769positivegrowth30mesophilic
67770positivegrowth28mesophilic
120878positivegrowth30mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
12087816947citrate-carbon source
1208784853esculin+hydrolysis
120878606565hippurate-hydrolysis
12087817632nitrate-reduction
12087816301nitrite-reduction

antibiotic resistance

  • @ref: 120878
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
12087835581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6836935581indole-
12087815688acetoin-
12087817234glucose+

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369arginine dihydrolase-3.5.3.6
120878oxidase+
120878beta-galactosidase-3.2.1.23
120878alcohol dehydrogenase-1.1.1.1
120878gelatinase-
120878amylase+
120878DNase-
120878caseinase-3.4.21.50
120878catalase+1.11.1.6
120878tween esterase-
120878gamma-glutamyltransferase-2.3.2.2
120878lecithinase-
120878lipase-
120878lysine decarboxylase-4.1.1.18
120878ornithine decarboxylase-4.1.1.17
120878tryptophan deaminase-
120878urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120878-+++-+--+-++---+----

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
4417----+/-+-+/--+/----+/-------+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinenthost species
4417chickpea nodulesSpainESPEurope
67770Cicer arietinum L.SpainESPEuropeCicer arietinum L.
120878Cicer arietinum L.SpainESPEurope

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Shrub (Scrub)
#Host Body-Site#Plant#Root nodule

taxonmaps

  • @ref: 69479
  • File name: preview.99_1684.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_220;97_239;98_268;99_1684&stattab=map
  • Last taxonomy: Mesorhizobium
  • 16S sequence: AM181745
  • Sequence Identity:
  • Total samples: 4459
  • soil counts: 2635
  • aquatic counts: 507
  • animal counts: 282
  • plant counts: 1035

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
44171Risk group (German classification)
1208781Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Mesorhizobium mediterraneum partial 16S rRNA gene, strain LMG 17148AM1817451426ena43617
20218Mesorhizobium mediterraneum gene for 16S rRNA, partial sequence, strain: NBRC 102497AB6818341410ena43617
20218Rhizobium mediterraneum 16S ribosomal RNA (16S rRNA) geneL388251423ena43617
20218Mesorhizobium mediterraneum strain USDA 3392 clone 1 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA, partial sequenceAF345261904ena43617
20218Mesorhizobium mediterraneum strain USDA 3392 clone 2 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA, partial sequenceAF345262997ena43617
20218Mesorhizobium mediterraneum 16S-23S ribosomal RNA intergenic spacer, partial sequenceAY574919925ena43617

External links

@ref: 4417

culture collection no.: DSM 11555, ATCC 51670, JCM 21565, HAMBI 2096, IAM 15104, LMG 17148, NBRC 102497, CIP 107327, LMG 14994, ORS 2739T

straininfo link

  • @ref: 81105
  • straininfo: 11220

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4417Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11555)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11555
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33769Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4751
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
81105Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID11220.1StrainInfo: A central database for resolving microbial strain identifiers
120878Curators of the CIPCollection of Institut Pasteur (CIP 107327)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107327