Strain identifier
BacDive ID: 11887
Type strain:
Species: Mesorhizobium ciceri
Strain history: <- TAL <- ICRISAT 3889, deposited as Rhizobium leguminosarum
NCBI tax ID(s): 39645 (species)
version 8.1 (current version)
General
@ref: 935
BacDive-ID: 11887
DSM-Number: 1978
keywords: 16S sequence, Bacteria, mesophilic
description: Mesorhizobium ciceri DSM 1978 is a mesophilic bacterium of the family Phyllobacteriaceae.
NCBI tax id
- NCBI tax id: 39645
- Matching level: species
strain history
- @ref: 935
- history: <- TAL <- ICRISAT 3889, deposited as Rhizobium leguminosarum
doi: 10.13145/bacdive11887.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Phyllobacteriaceae
- genus: Mesorhizobium
- species: Mesorhizobium ciceri
- full scientific name: Mesorhizobium ciceri (Nour et al. 1994) Jarvis et al. 1997
synonyms
- @ref: 20215
- synonym: Rhizobium ciceri
@ref: 935
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Phyllobacteriaceae
genus: Mesorhizobium
species: Mesorhizobium ciceri
full scientific name: Mesorhizobium ciceri (Nour et al. 1994) Jarvis et al. 1997
type strain: no
Culture and growth conditions
culture medium
- @ref: 935
- name: RHIZOBIUM MEDIUM (DSMZ Medium 98)
- growth: yes
- link: https://mediadive.dsmz.de/medium/98
- composition: Name: RHIZOBIUM MEDIUM (DSMZ Medium 98) Composition: air-dried garden soil 80.0 g/l Agar 15.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l Na2CO3 0.2 g/l Distilled water
culture temp
- @ref: 935
- growth: positive
- type: growth
- temperature: 26
- range: mesophilic
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | - | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | + | assimilation |
68369 | 59640 | N-acetylglucosamine | + | assimilation |
68369 | 16899 | D-mannitol | + | assimilation |
68369 | 16024 | D-mannose | + | assimilation |
68369 | 30849 | L-arabinose | + | assimilation |
68369 | 17634 | D-glucose | + | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | + | hydrolysis |
68369 | 16199 | urea | + | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | + | 3.2.1.21 |
68369 | urease | + | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
935 | - | - | - | - | + | + | - | + | + | + | + | + | + | + | - | - | - | + | + | - | + |
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_809.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_220;97_239;98_643;99_809&stattab=map
- Last taxonomy: Mesorhizobium
- 16S sequence: JF342246
- Sequence Identity:
- Total samples: 30688
- soil counts: 18576
- aquatic counts: 5652
- animal counts: 4689
- plant counts: 1771
Safety information
risk assessment
- @ref: 935
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Mesorhizobium sp. TAL620(2011) 16S ribosomal RNA gene, partial sequence
- accession: JF342246
- length: 1423
- database: ena
- NCBI tax ID: 1074018
External links
@ref: 935
culture collection no.: DSM 1978, TAL 620
straininfo link
- @ref: 81104
- straininfo: 47521
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Metabolism | 16978364 | Characterization of a symbiotically defective serine auxotroph of Mesorhizobium ciceri. | Das SK, Gautam US, Chakrabartty PK, Singh A | FEMS Microbiol Lett | 10.1111/j.1574-6968.2006.00424.x | 2006 | Alphaproteobacteria/*metabolism, Cicer/*microbiology, Culture Media, Molecular Sequence Data, Mutagenesis, Insertional, Nitrogen Fixation, Plant Roots/microbiology, Serine/*metabolism, Symbiosis/*genetics | Cultivation |
Enzymology | 17953590 | Characterization of an rpoN mutant of Mesorhizobium ciceri. | Gautam US, Jajoo A, Singh A, Chakrabartty PK, Das SK | J Appl Microbiol | 10.1111/j.1365-2672.2007.03432.x | 2007 | Bacterial Proteins/*genetics, Base Sequence, Cicer/microbiology, Cloning, Molecular, Dicarboxylic Acid Transporters/*genetics, Molecular Sequence Data, Mutagenesis, *Mutation, Nitrogen Fixation/*genetics, Phenotype, Rhizobium/genetics/isolation & purification/*metabolism, Sequence Analysis, DNA, Symbiosis/*genetics | Genetics |
20130696 | Transformation of Sinorhizobium meliloti MTCC 100 and Mesorhizobium ciceri TAL 620 by CaCl2 method. | Patel U, Sinha S | Can J Microbiol | 10.1139/w09-114 | 2010 | *Alphaproteobacteria/genetics, *Calcium Chloride/chemistry, DNA, Bacterial/genetics, Genetic Vectors/genetics, *Sinorhizobium meliloti/genetics, *Transformation, Bacterial |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
935 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1978) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1978 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
68369 | Automatically annotated from API 20NE | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
81104 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47521.1 | StrainInfo: A central database for resolving microbial strain identifiers |