Strain identifier

BacDive ID: 11887

Type strain: No

Species: Mesorhizobium ciceri

Strain history: <- TAL <- ICRISAT 3889, deposited as Rhizobium leguminosarum

NCBI tax ID(s): 39645 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 935

BacDive-ID: 11887

DSM-Number: 1978

keywords: 16S sequence, Bacteria, mesophilic

description: Mesorhizobium ciceri DSM 1978 is a mesophilic bacterium of the family Phyllobacteriaceae.

NCBI tax id

  • NCBI tax id: 39645
  • Matching level: species

strain history

  • @ref: 935
  • history: <- TAL <- ICRISAT 3889, deposited as Rhizobium leguminosarum

doi: 10.13145/bacdive11887.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Phyllobacteriaceae
  • genus: Mesorhizobium
  • species: Mesorhizobium ciceri
  • full scientific name: Mesorhizobium ciceri (Nour et al. 1994) Jarvis et al. 1997
  • synonyms

    • @ref: 20215
    • synonym: Rhizobium ciceri

@ref: 935

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Phyllobacteriaceae

genus: Mesorhizobium

species: Mesorhizobium ciceri

full scientific name: Mesorhizobium ciceri (Nour et al. 1994) Jarvis et al. 1997

type strain: no

Culture and growth conditions

culture medium

  • @ref: 935
  • name: RHIZOBIUM MEDIUM (DSMZ Medium 98)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/98
  • composition: Name: RHIZOBIUM MEDIUM (DSMZ Medium 98) Composition: air-dried garden soil 80.0 g/l Agar 15.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l Na2CO3 0.2 g/l Distilled water

culture temp

  • @ref: 935
  • growth: positive
  • type: growth
  • temperature: 26
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea+hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
935----++-+++++++---++-+

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_809.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_220;97_239;98_643;99_809&stattab=map
  • Last taxonomy: Mesorhizobium
  • 16S sequence: JF342246
  • Sequence Identity:
  • Total samples: 30688
  • soil counts: 18576
  • aquatic counts: 5652
  • animal counts: 4689
  • plant counts: 1771

Safety information

risk assessment

  • @ref: 935
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Mesorhizobium sp. TAL620(2011) 16S ribosomal RNA gene, partial sequence
  • accession: JF342246
  • length: 1423
  • database: ena
  • NCBI tax ID: 1074018

External links

@ref: 935

culture collection no.: DSM 1978, TAL 620

straininfo link

  • @ref: 81104
  • straininfo: 47521

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism16978364Characterization of a symbiotically defective serine auxotroph of Mesorhizobium ciceri.Das SK, Gautam US, Chakrabartty PK, Singh AFEMS Microbiol Lett10.1111/j.1574-6968.2006.00424.x2006Alphaproteobacteria/*metabolism, Cicer/*microbiology, Culture Media, Molecular Sequence Data, Mutagenesis, Insertional, Nitrogen Fixation, Plant Roots/microbiology, Serine/*metabolism, Symbiosis/*geneticsCultivation
Enzymology17953590Characterization of an rpoN mutant of Mesorhizobium ciceri.Gautam US, Jajoo A, Singh A, Chakrabartty PK, Das SKJ Appl Microbiol10.1111/j.1365-2672.2007.03432.x2007Bacterial Proteins/*genetics, Base Sequence, Cicer/microbiology, Cloning, Molecular, Dicarboxylic Acid Transporters/*genetics, Molecular Sequence Data, Mutagenesis, *Mutation, Nitrogen Fixation/*genetics, Phenotype, Rhizobium/genetics/isolation & purification/*metabolism, Sequence Analysis, DNA, Symbiosis/*geneticsGenetics
20130696Transformation of Sinorhizobium meliloti MTCC 100 and Mesorhizobium ciceri TAL 620 by CaCl2 method.Patel U, Sinha SCan J Microbiol10.1139/w09-1142010*Alphaproteobacteria/genetics, *Calcium Chloride/chemistry, DNA, Bacterial/genetics, Genetic Vectors/genetics, *Sinorhizobium meliloti/genetics, *Transformation, Bacterial

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
935Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1978)https://www.dsmz.de/collection/catalogue/details/culture/DSM-1978
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
81104Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID47521.1StrainInfo: A central database for resolving microbial strain identifiers