Strain identifier

BacDive ID: 11880

Type strain: Yes

Species: Mesorhizobium loti

Strain Designation: ORS664T

Strain history: CIP <- 2002, P. de Lajudie Montpellier, France: strain ORS664T <- 1984, LMG <- 1984, B. Jarvis, Rhizobium loti <- R. Greenwood: strain NZP 2213

NCBI tax ID(s): 381 (species)

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General

@ref: 1173

BacDive-ID: 11880

DSM-Number: 2626

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile

description: Mesorhizobium loti ORS664T is a mesophilic, motile bacterium that was isolated from Lotus corniculatus nodule.

NCBI tax id

  • NCBI tax id: 381
  • Matching level: species

strain history

@refhistory
1173<- D. Scott <- R.M. Greenwood, strain NZP 2213
67770IAM 14993 <-- ATCC 700743 <-- LMG 17826 <-- B. D. W. Jarvis NZP 2213 <-- R. M. Greenwood.
120655CIP <- 2002, P. de Lajudie Montpellier, France: strain ORS664T <- 1984, LMG <- 1984, B. Jarvis, Rhizobium loti <- R. Greenwood: strain NZP 2213

doi: 10.13145/bacdive11880.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Phyllobacteriaceae
  • genus: Mesorhizobium
  • species: Mesorhizobium loti
  • full scientific name: Mesorhizobium loti (Jarvis et al. 1982) Jarvis et al. 1997

  • synonyms

    • @ref: 20215
    • synonym: Rhizobium loti

@ref: 1173

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Phyllobacteriaceae

genus: Mesorhizobium

species: Mesorhizobium loti

full scientific name: Mesorhizobium loti (Jarvis et al. 1982) Jarvis et al. 1997 emend. Martínez-Hidalgo et al. 2015 emend. Hameed et al. 2015

strain designation: ORS664T

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes91.598
6948099.972negative
120655nonegativerod-shaped

colony morphology

  • @ref: 1173
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1173NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
1173RHIZOBIUM MEDIUM (DSMZ Medium 98)yeshttps://mediadive.dsmz.de/medium/98Name: RHIZOBIUM MEDIUM (DSMZ Medium 98) Composition: air-dried garden soil 80.0 g/l Agar 15.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l Na2CO3 0.2 g/l Distilled water
40706MEDIUM 296 - for RhizobiumyesDistilled water make up to (800.000 ml);Agar (15.000 g);Yeast extract (1.000 g);Mannitol (10.000 g);Earth extract - M0541 (200.000 ml)
120655CIP Medium 296yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=296

culture temp

@refgrowthtypetemperaturerange
1173positivegrowth25mesophilic
1173positivegrowth26mesophilic
40706positivegrowth30mesophilic
67770positivegrowth25mesophilic
120655positivegrowth10-30
120655nogrowth37mesophilic
120655nogrowth41thermophilic
120655nogrowth45thermophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.985

halophily

@refsaltgrowthtested relationconcentration
120655NaClnogrowth0 %
120655NaClnogrowth2 %
120655NaClnogrowth4 %
120655NaClnogrowth6 %
120655NaClnogrowth8 %
120655NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
68369decanoate-assimilation27689
68369gelatin-hydrolysis5291
68369esculin-hydrolysis4853
68369arginine-hydrolysis29016
68369D-glucose-fermentation17634
68369tryptophan-energy source27897
68369nitrate-reduction17632
120655esculin-hydrolysis4853
120655hippurate-hydrolysis606565
120655nitrate-reduction17632
120655nitrite-reduction16301
120655nitrate-respiration17632

antibiotic resistance

  • @ref: 120655
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
12065535581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6836935581indole-
12065515688acetoin-
12065517234glucose-

enzymes

@refvalueactivityec
1173cytochrome-c oxidase+1.9.3.1
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369arginine dihydrolase-3.5.3.6
120655oxidase-
120655beta-galactosidase+3.2.1.23
120655alcohol dehydrogenase-1.1.1.1
120655gelatinase-
120655amylase+
120655DNase-
120655caseinase-3.4.21.50
120655catalase-1.11.1.6
120655tween esterase-
120655gamma-glutamyltransferase+2.3.2.2
120655lecithinase-
120655lipase-
120655lysine decarboxylase-4.1.1.18
120655ornithine decarboxylase-4.1.1.17
120655phenylalanine ammonia-lyase-4.3.1.24
120655tryptophan deaminase-
120655urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120655-+++-+--+--+---+----

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
1173----+--+/-++++++---+--+
1173-------+---+/-+/-----+/---
1173-------+++/--++/-++/--+/-+--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
120655------------------------+/-+/-----------------------+/-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
120655--------------------------------------------------------------+--+--------------------+------------

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
1173Lotus corniculatus noduleLotus corniculatusNorth island, Palmerston, MilsonNew ZealandNZLAustralia and Oceania
61084Birdsfoot trefoil,lotus corniculatus,root noduleNew ZealandNZLAustralia and Oceania
67770Root nodule on birds-foot trefoil (Lotus corniculatus)Lotus corniculatusNew ZealandNZLAustralia and Oceania
120655Lotus corniculatus noduleNew ZealandNZLAustralia and Oceania

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root nodule

taxonmaps

  • @ref: 69479
  • File name: preview.99_809.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_220;97_239;98_643;99_809&stattab=map
  • Last taxonomy: Mesorhizobium
  • 16S sequence: X67229
  • Sequence Identity:
  • Total samples: 30688
  • soil counts: 18576
  • aquatic counts: 5652
  • animal counts: 4689
  • plant counts: 1771

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
11731Risk group (German classification)
1206551Risk group (French classification)

Sequence information

16S sequences

  • @ref: 1173
  • description: Mesorhizobium loti partial 16S rRNA gene, strain LMG 6125
  • accession: X67229
  • length: 1437
  • database: ena
  • NCBI tax ID: 381

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mesorhizobium loti DSM 2626GCA_003148495scaffoldncbi381
66792Mesorhizobium jarvisii ATCC 33669GCA_013170785completencbi1777867
66792Mesorhizobium loti LMG 6125GCA_003024615contigncbi381
66792Mesorhizobium jarvisii strain ATCC 7007431777867.5completepatric1777867
66792Mesorhizobium loti strain DSM 2626381.89wgspatric381
66792Mesorhizobium loti strain LMG 6125381.88wgspatric381
66792Mesorhizobium loti DSM 26262756170246draftimg381

GC content

  • @ref: 1173
  • GC-content: 59.0-64.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes83.831no
flagellatedno84.259no
gram-positiveno97.968no
anaerobicno98.924no
aerobicyes92.717no
halophileno93.547no
spore-formingno93.921no
glucose-utilyes91.294no
thermophileno99.308yes
glucose-fermentno91.089yes

External links

@ref: 1173

culture collection no.: DSM 2626, ATCC 700743, CCUG 56774, LMG 6125, IFO 14779, NBRC 14779, NZP 2213, JCM 21464, ATCC 33669, CCUG 27878, HAMBI 1129, IAM 14993, ICMP 4682, LMG 17826, NCIMB 12074, OUT 30009, CIP 107326

straininfo link

  • @ref: 81097
  • straininfo: 264230

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny2984178Isolation and characterization of transposon Tn5-induced symbiotic mutants of Rhizobium loti.Chua KY, Pankhurst CE, Macdonald PE, Hopcroft DH, Jarvis BD, Scott DBJ Bacteriol10.1128/jb.162.1.335-343.19851985*DNA Transposable Elements, Genetic Complementation Test, Microscopy, Electron, *Mutation, Plasmids, Rhizobium/*genetics/ultrastructure, Symbiosis
Enzymology6313860Transfer of an indigenous plasmid of Rhizobium loti to other rhizobia and Agrobacterium tumefaciens.Pankhurst CE, Broughton WJ, Wieneke UJ Gen Microbiol10.1099/00221287-129-8-25351983Conjugation, Genetic, DNA Transposable Elements, DNA, Bacterial/genetics, Electrophoresis, Agar Gel, Nitrogen Fixation, Nucleic Acid Hybridization, *Plasmids, Rhizobium/*geneticsPhylogeny
Enzymology7794102Chemical characterization of two lipopolysaccharide species isolated from Rhizobium loti NZP2213.Russa R, Urbanik-Sypniewska T, Lindstrom K, Mayer HArch Microbiol10.1007/BF004042071995Carbohydrates/analysis, Fatty Acids/analysis, Lipopolysaccharides/chemistry/*isolation & purification, Phosphates/analysis, Rhizobium/*chemistryPhylogeny
Phylogeny8702274Four unnamed species of nonsymbiotic rhizobia isolated from the rhizosphere of Lotus corniculatus.Sullivan JT, Eardly BD, van Berkum P, Ronson CWAppl Environ Microbiol10.1128/aem.62.8.2818-2825.19961996Base Sequence, Culture Media, DNA, Bacterial/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Plants/*microbiology, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Rhizobium/classification/growth & development/*isolation & purificationCultivation
Genetics8850088Novel and complex chromosomal arrangement of Rhizobium loti nodulation genes.Scott DB, Young CA, Collins-Emerson JM, Terzaghi EA, Rockman ES, Lewis PE, Pankhurst CEMol Plant Microbe Interact10.1094/mpmi-9-01871996Acyltransferases/genetics, Amidohydrolases/genetics, Amino Acid Sequence, Bacterial Proteins/genetics, Base Sequence, Chromosome Mapping, Chromosomes, Bacterial/genetics, DNA Primers/genetics, DNA, Bacterial/genetics, Fabaceae/microbiology, Gene Rearrangement, *Genes, Bacterial, Genetic Complementation Test, Molecular Sequence Data, Mutagenesis, Insertional, Nitrogen Fixation/genetics, Operon, Plants, Medicinal, Rhizobium/*genetics, Sequence Homology, Amino Acid, Symbiosis
Enzymology9133327The requirement for exopolysaccharide precedes the requirement for flavolan-binding polysaccharide in nodulation of Leucaena leucocephala by Rhizobium loti.Hotter GS, Scott DBArch Microbiol1997Chromatography, Ion Exchange, Cloning, Molecular, DNA, Bacterial/genetics, Fabaceae/*microbiology, Gene Expression Regulation, Bacterial, Mutagenesis, Nitrogen Fixation, *Plants, Medicinal, Polysaccharides/genetics/*metabolism, Rhizobium/genetics/*metabolismMetabolism
Metabolism9636046Novel branched nod factor structure results from alpha-(1-->3) fucosyl transferase activity: the major lipo-chitin oligosaccharides from Mesorhizobium loti strain NZP2213 bear an alpha-(1-->3) fucosyl substituent on a nonterminal backbone residue.Olsthoorn MM, Lopez-Lara IM, Petersen BO, Bock K, Haverkamp J, Spaink HP, Thomas-Oates JEBiochemistry10.1021/bi972937r1998Acetylglucosamine/chemistry, Bacterial Proteins/metabolism, Carbohydrate Conformation, Chitin/*chemistry/metabolism, Chromatography, High Pressure Liquid, Chromatography, Thin Layer, Fabaceae/*microbiology, Fucose/*metabolism, Fucosyltransferases/*chemistry/metabolism, Gas Chromatography-Mass Spectrometry, Lipopolysaccharides/*chemistry/metabolism, Methyltransferases/metabolism, Nuclear Magnetic Resonance, Biomolecular, *Plants, Medicinal, Rhizobium/chemistry/*enzymology, Structure-Activity RelationshipEnzymology
Phylogeny10706666A new Mesorhizobium loti HAMBI 1129 phage isolated from Polish soil.Turska-Szewczuk A, Russa RCurr Microbiol10.1007/s0028499100672000Alphaproteobacteria/*virology, Bacteriophages/*classification/*isolation & purification/physiology, Microscopy, Electron, Receptors, Virus/metabolism, *Soil MicrobiologyEnzymology
Enzymology12932373Elucidation of the O-chain structure from the lipopolysaccharide of Agrobacterium tumefaciens strain C58.De Castro C, Bedini E, Nunziata R, Rinaldi R, Mangoni L, Parrilli MCarbohydr Res10.1016/s0008-6215(03)00310-02003Acetates/chemistry, Acetylation, Agrobacterium tumefaciens/*chemistry, Carbohydrate Sequence, Deoxy Sugars/*analysis, Electrophoresis, Polyacrylamide Gel, Gas Chromatography-Mass Spectrometry, Hexoses/*analysis, Hydrolysis, Lipopolysaccharides/*chemistry/isolation & purification, Magnetic Resonance Spectroscopy, Molecular Sequence Data, O Antigens/*chemistry/isolation & purification, Polysaccharides, Bacterial/chemistryPhylogeny
Metabolism17321732The incomplete substitution of lipopolysaccharide with O-chain prevents the establishment of effective symbiosis between Mesorhizobium loti NZP2213.1 and Lotus corniculatus.Turska-Szewczuk A, Lotocka B, Kutkowska J, Krol J, Urbanik-Sypniewska T, Russa RMicrobiol Res10.1016/j.micres.2006.11.0112007Alphaproteobacteria/chemistry/genetics/*physiology, Bacterial Proteins/genetics, Deoxy Sugars/metabolism, Glycosyltransferases/genetics, Hexoses/metabolism, Lipopolysaccharides/*chemistry/metabolism, Lotus/microbiology/*physiology, Mutagenesis, Insertional, Root Nodules, Plant/microbiology/physiology, *Symbiosis
Phylogeny17473255Mesorhizobium ciceri biovar biserrulae, a novel biovar nodulating the pasture legume Biserrula pelecinus L.Nandasena KG, O'Hara GW, Tiwari RP, Willlems A, Howieson JGInt J Syst Evol Microbiol10.1099/ijs.0.64891-02007Acyltransferases/genetics, Alphaproteobacteria/*classification/genetics/physiology, Bacterial Proteins/genetics, Bacterial Typing Techniques, Base Composition, Carbohydrate Metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Drug Resistance, Bacterial, Fabaceae/*microbiology/physiology, Fatty Acids/analysis, Genes, rRNA, Genomic Islands/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/genetics, Phylogeny, Plasmids/genetics, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Symbiosis/geneticsGenetics
Genetics18160063Structural studies of the O-polysaccharide chain from the lipopolysaccharide of symbiotically enhanced mutant Mlo-13 of Mesorhizobium loti NZP2213.Turska-Szewczuk A, Palusinska-Szysz M, Russa RCarbohydr Res10.1016/j.carres.2007.11.0212007Carbohydrate Conformation, Carbohydrate Sequence, Lactones, Lipopolysaccharides/*chemistry, Magnetic Resonance Spectroscopy, Mass Spectrometry, Molecular Sequence Data, Mutation, O Antigens/*chemistry/isolation & purification, Rhamnose, Rhizobium/*chemistryEnzymology
Enzymology18217107Alteration of O-specific polysaccharide structure of symbiotically defective Mesorhizobium loti mutant 2213.1 derived from strain NZP2213.Turska-Szewczuk A, Pietras H, Borucki W, Russa RActa Biochim Pol200815522008Acylation, Antigens/chemistry, Biochemistry/methods, Blotting, Western, Carbohydrates/chemistry, Deoxy Sugars/chemistry, Electrophoresis, Polyacrylamide Gel, Epitopes/chemistry, Hexoses/chemistry, Immunohistochemistry, Magnetic Resonance Spectroscopy/methods, Models, Chemical, *Mutation, Polysaccharides/*chemistry, Rhizobium/*genetics, Substrate Specificity
Phylogeny19074602Genetic diversity and host range of rhizobia nodulating Lotus tenuis in typical soils of the Salado River Basin (Argentina).Estrella MJ, Munoz S, Soto MJ, Ruiz O, Sanjuan JAppl Environ Microbiol10.1128/AEM.02405-082008Alphaproteobacteria/*classification/genetics/*isolation & purification, Argentina, Bacterial Proteins/genetics, Cluster Analysis, Conserved Sequence, DNA Fingerprinting, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Genetic Variation, Genotype, Lotus/*microbiology, Molecular Sequence Data, N-Acetylglucosaminyltransferases/genetics, Oxidoreductases/genetics, Phylogeny, Plant Roots/microbiology, Polymorphism, Restriction Fragment Length, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil MicrobiologyGenetics
Metabolism19295655Functional analysis of three AHL autoinducer synthase genes in Mesorhizobium loti reveals the important role of quorum sensing in symbiotic nodulation.Yang M, Sun K, Zhou L, Yang R, Zhong Z, Zhu JCan J Microbiol10.1139/w08-1282009Acyl-Butyrolactones/metabolism, Alphaproteobacteria/*enzymology/genetics/*physiology, Bacterial Proteins/genetics/*metabolism, Gene Expression Regulation, Bacterial, Ligases/genetics/*metabolism, Lotus/microbiology/physiology, *Quorum Sensing, Root Nodules, Plant/*microbiology/physiology, *SymbiosisEnzymology
Phylogeny19643905Mesorhizobium shangrilense sp. nov., isolated from root nodules of Caragana species.Lu YL, Chen WF, Wang ET, Han LL, Zhang XX, Chen WX, Han SZInt J Syst Evol Microbiol10.1099/ijs.0.007393-02009Alphaproteobacteria/*classification/genetics/*isolation & purification, Caragana/*microbiology, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiologyGenetics
Phylogeny19666787Chelativorans multitrophicus gen. nov., sp. nov. and Chelativorans oligotrophicus sp. nov., aerobic EDTA-degrading bacteria.Doronina NV, Kaparullina EN, Trotsenko YA, Nortemann B, Bucheli-Witschel M, Weilenmann HU, Egli TInt J Syst Evol Microbiol10.1099/ijs.0.003152-02009Aerobiosis, Alphaproteobacteria/*classification/genetics/metabolism/physiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Edetic Acid/*metabolism, Fatty Acids/analysis, Genes, rRNA, Genotype, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA, Sewage/*microbiology, Species Specificity, SwitzerlandGenetics
Phylogeny23315406Mesorhizobium sangaii sp. nov., isolated from the root nodules of Astragalus luteolus and Astragalus ernestii.Zhou S, Li Q, Jiang H, Lindstrom K, Zhang XInt J Syst Evol Microbiol10.1099/ijs.0.044685-02013Astragalus Plant/*microbiology, Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Genes, Bacterial, Mesorhizobium/*classification/genetics/isolation & purification, Molecular Sequence Data, Nitrogen Fixation, Nucleic Acid Hybridization, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, SymbiosisGenetics
Phylogeny25736411Revision of the taxonomic status of type strains of Mesorhizobium loti and reclassification of strain USDA 3471T as the type strain of Mesorhizobiumerdmanii sp. nov. and ATCC 33669T as the type strain of Mesorhizobiumjarvisii sp. nov.Martinez-Hidalgo P, Ramirez-Bahena MH, Flores-Felix JD, Rivas R, Igual JM, Mateos PF, Martinez-Molina E, Leon-Barrios M, Peix A, Velazquez EInt J Syst Evol Microbiol10.1099/ijs.0.0001642015Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Genes, Bacterial, Lotus/*microbiology, Mesorhizobium/*classification/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/microbiology, Sequence Analysis, DNA, United States, United States Department of AgricultureGenetics
25779926Growth and Survival of Mesorhizobium loti Inside Acanthamoeba Enhanced Its Ability to Develop More Nodules on Lotus corniculatus.Karas MA, Turska-Szewczuk A, Trapska D, Urbanik-Sypniewska TMicrob Ecol10.1007/s00248-015-0587-62015Acanthamoeba/*microbiology, Lotus/*microbiology, Mesorhizobium/*growth & development/*physiology, Symbiosis/physiology
Phylogeny27565417Reclassification of strains MAFF 303099T and R7A into Mesorhizobiumjaponicum sp. nov.Martinez-Hidalgo P, Ramirez-Bahena MH, Flores-Felix JD, Igual JM, Sanjuan J, Leon-Barrios M, Peix A, Velazquez EInt J Syst Evol Microbiol10.1099/ijsem.0.0014482016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Japan, Lotus/*microbiology, Mesorhizobium/*classification/genetics, New Zealand, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, SymbiosisTranscriptome
30413017A Mutation in the Mesorhizobium loti oatB Gene Alters the Physicochemical Properties of the Bacterial Cell Wall and Reduces Survival inside Acanthamoeba castellanii.Karas MA, Turska-Szewczuk A, Marczak M, Jaszek M, Janczarek M, Dworaczek K, Stefaniuk D, Wydrych JInt J Mol Sci10.3390/ijms191135102018Acanthamoeba castellanii/genetics/*microbiology/pathogenicity, Acetyltransferases/*genetics, Bacterial Proteins/*genetics, Cell Wall/microbiology, Mesorhizobium/*genetics, Mutation
Phylogeny32564274Mesorhizobium terrae sp. nov., a novel species isolated from soil in Jangsu, Korea.Jung YJ, Kim HJ, Hur MAntonie Van Leeuwenhoek10.1007/s10482-020-01435-02020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, High-Throughput Nucleotide Sequencing, Mesorhizobium/*classification/isolation & purification/*physiology, Molecular Typing, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, *Soil Microbiology, Ubiquinone/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitle
1173Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2626)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2626
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
40706Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4749
61084Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 56774)https://www.ccug.se/strain?id=56774
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
81097Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID264230.1StrainInfo: A central database for resolving microbial strain identifiers
120655Curators of the CIPCollection of Institut Pasteur (CIP 107326)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107326