Strain identifier
BacDive ID: 1187
Type strain:
Species: Bacillus spizizenii
Strain Designation: 231, NRS-231
Strain history: CIP <- 1952, R.E. Gordon, New Jersey Agri. Exper. Stat., New Brunswick, USA: strain NRS-231 <- K.F. Kellerman
NCBI tax ID(s): 96241 (species)
General
@ref: 140
BacDive-ID: 1187
DSM-Number: 347
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, motile, antibiotic compound production, human pathogen
description: Bacillus spizizenii 231 is an aerobe, spore-forming, mesophilic human pathogen that produces antibiotic compounds and was isolated from Collected before 1952.
NCBI tax id
- NCBI tax id: 96241
- Matching level: species
strain history
@ref | history |
---|---|
140 | <- ATCC <- N.R. Smith, 231 <- K.F. Kellermann |
67770 | ATCC 6633 <-- N. R. Smith 231 <-- K. F. Kellerman. |
67770 | IAM 1069 <-- K. Sakaguchi <-- NIHJ <-- ATCC 6633 <-- N. R. Smith NRS 231 <-- K. F. Kellerman. |
123358 | CIP <- 1952, R.E. Gordon, New Jersey Agri. Exper. Stat., New Brunswick, USA: strain NRS-231 <- K.F. Kellerman |
doi: 10.13145/bacdive1187.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus spizizenii
- full scientific name: Bacillus spizizenii (Nakamura et al. 1999) Dunlap et al. 2020
synonyms
- @ref: 20215
- synonym: Bacillus subtilis subsp. spizizenii
@ref: 140
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus spizizenii
full scientific name: Bacillus spizizenii (Nakamura et al. 1999) Dunlap et al. 2020
strain designation: 231, NRS-231
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 93.501 | ||
69480 | 100 | positive | ||
123358 | yes | positive | rod-shaped |
colony morphology
- @ref: 123358
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
41811 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
140 | NUTRIENT AGAR (DSMZ Medium 1) | yes | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water | https://mediadive.dsmz.de/medium/1 |
123358 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
140 | positive | growth | 30 | mesophilic |
41811 | positive | growth | 30 | mesophilic |
45335 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
123358 | positive | growth | 30-45 | |
123358 | no | growth | 10 | psychrophilic |
123358 | no | growth | 55 | thermophilic |
culture pH
- @ref: 123358
- ability: positive
- type: growth
- pH: 6
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
45335 | aerobe |
123358 | obligate aerobe |
antibiogram
@ref | medium | Penicillin G | oxacillin | ampicillin | ticarcillin | mezlocillin | cefalotin | cefazolin | cefotaxime | aztreonam | imipenem | tetracycline | chloramphenicol | gentamycin | amikacin | vancomycin | erythromycin | lincomycin | ofloxacin | norfloxacin | colistin | pipemidic acid | nitrofurantoin | bacitracin | polymyxin b | kanamycin | neomycin | doxycycline | ceftriaxone | clindamycin | fosfomycin | moxifloxacin | linezolid | nystatin | quinupristin/dalfopristin | teicoplanin | piperacillin/tazobactam | incubation temperature | oxygen condition | incubation time |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
140 | Mueller-Hinton Agar | 38 | 32 | 36 | 42 | 32-34 | 48 | 42 | 38-40 | 12 | 48 | 36-38 | 34 | 28 | 30 | 26 | 34 | 20 | 36 | 34 | 10 | 24 | 24 | 14-16 | 14 | 30 | 24 | 36 | 34 | 32 | 10 | 40 | 36 | 0 | 20 | 20 | 34 | |||
140 | Mueller-Hinton Agar | 38 | 32 | 36-38 | 42 | 32 | 46 | 42 | 40 | 14-16 | 50 | 36 | 34-36 | 26 | 30 | 26 | 32-34 | 20 | 34 | 34 | 10 | 24 | 22 | 8 | 12 | 30 | 22-24 | 38-40 | 34-36 | 32 | 14 | 38 | 36 | 0 | 22 | 22 | 34 | |||
140 | Mueller-Hinton Agar | 40 | 32-34 | 40 | 42 | 32-34 | 50 | 42 | 38-40 | 10-12 | 50 | 38-40 | 36 | 28-30 | 30-32 | 26 | 36 | 22 | 36 | 36 | 12 | 26 | 22 | 10 | 16 | 32 | 26 | 38-40 | 36 | 32-34 | 6-8 | 40 | 40 | 0 | 22 | 22 | 34 | 30 | aerob | |
140 | Mueller-Hinton Agar | 40 | 34 | 40 | 44 | 36 | 50 | 42 | 40 | 12 | 50 | 38 | 38 | 30 | 30 | 26-28 | 36-38 | 22 | 36 | 38 | 10 | 28 | 24 | 10 | 14 | 32 | 24 | 40 | 36-38 | 32 | 8 | 40 | 40 | 0 | 22-24 | 22 | 36 | 30 | aerob | 1 |
140 | Mueller-Hinton Agar | 38 | 32 | 38 | 40 | 32 | 44 | 40 | 36 | 12 | 46 | 34 | 32 | 30 | 30 | 24 | 32 | 16 | 34 | 34 | 10 | 24 | 22 | 8 | 12 | 30 | 22 | 36 | n.d. | n.d. | n.d. | n.d. | n.d. | n.d. | n.d. | n.d. | n.d. | 37 | ||
140 | Mueller-Hinton Agar | 36-38 | 32 | 36-38 | 40 | 32 | 48 | 40-42 | 38 | 16 | 50 | 38 | 36 | 30 | 30 | 24 | 34 | 22 | 36 | 34-36 | 10 | 26 | 24 | 6 | 14 | 32 | 24 | 40 | 34 | 34 | 0 | 40 | 40 | 0 | 22 | 22 | 34 | 30 | aerob | |
140 | Mueller-Hinton Agar | 36-38 | 32 | 36-38 | 40 | 32 | 48 | 40-42 | 38 | 16 | 50 | 38 | 36 | 30 | 30 | 24 | 34 | 22 | 36 | 34-36 | 10 | 26 | 24 | 6 | 14 | 32 | 24 | 40 | 34 | 34 | 0 | 40 | 40 | 0 | 22 | 22 | 34 | 30 | aerob | |
140 | Mueller Hinton | 40 | 34 | 38 | 42 | 34 | 48 | 42 | 40 | 16 | 48 | 40 | 34 | 26 | 28 | 24 | 32 | 16-18 | 36 | 34 | 8 | 26 | 28 | 6 | 12 | 30 | 24 | 40 | 36-38 | 30 | 8-10 | 40 | 40 | 0 | 22 | 20 | 34 | 30 | aerob |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | yes | 100 |
123358 | yes |
compound production
@ref | compound |
---|---|
140 | restriction endonuclease Bsu6633 |
140 | subtilin |
140 | bacilysin |
140 | fengymycin |
halophily
- @ref: 123358
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-10 %
observation
- @ref: 67770
- observation: quinones: MK-7
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | + | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | + | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | + | builds acid from | 28087 |
68371 | starch | + | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | + | builds acid from | 15443 |
68371 | trehalose | + | builds acid from | 27082 |
68371 | sucrose | + | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | - | builds acid from | 17716 |
68371 | maltose | + | builds acid from | 17306 |
68371 | cellobiose | + | builds acid from | 17057 |
68371 | salicin | + | builds acid from | 17814 |
68371 | esculin | + | builds acid from | 4853 |
68371 | arbutin | + | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | - | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | + | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | + | builds acid from | 17924 |
68371 | D-mannitol | + | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | + | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | - | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | + | builds acid from | 65327 |
68371 | D-ribose | + | builds acid from | 16988 |
68371 | L-arabinose | + | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | + | builds acid from | 17754 |
68368 | nitrate | - | reduction | 17632 |
68368 | L-arabinose | + | fermentation | 30849 |
68368 | amygdalin | - | fermentation | 27613 |
68368 | melibiose | - | fermentation | 28053 |
68368 | sucrose | - | fermentation | 17992 |
68368 | L-rhamnose | - | fermentation | 62345 |
68368 | sorbitol | - | fermentation | 30911 |
68368 | myo-inositol | - | fermentation | 17268 |
68368 | D-mannitol | - | fermentation | 16899 |
68368 | D-glucose | - | fermentation | 17634 |
68368 | tryptophan | - | energy source | 27897 |
68368 | urea | - | hydrolysis | 16199 |
68368 | ornithine | - | degradation | 18257 |
68368 | lysine | - | degradation | 25094 |
68368 | arginine | - | hydrolysis | 29016 |
123358 | nitrate | + | reduction | 17632 |
123358 | nitrite | - | reduction | 16301 |
123358 | nitrate | - | respiration | 17632 |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 17997 | dinitrogen | no |
68368 | 16301 | nitrite | no |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
123358 | 35581 | indole | no |
metabolite tests
- @ref: 68368
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | + | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
123358 | oxidase | + | |
123358 | alcohol dehydrogenase | - | 1.1.1.1 |
123358 | gelatinase | + | |
123358 | amylase | + | |
123358 | caseinase | + | 3.4.21.50 |
123358 | catalase | + | 1.11.1.6 |
123358 | lecithinase | - | |
123358 | lysine decarboxylase | - | 4.1.1.18 |
123358 | ornithine decarboxylase | - | 4.1.1.17 |
123358 | protease | + | |
123358 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123358 | - | + | + | + | - | + | - | - | + | - | + | + | - | + | - | + | + | - | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | NO2 | N2 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
45335 | + | - | - | - | + | - | - | - | - | + | + | - | - | - | - | - | - | - | - | + | - | ||
123358 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API 50CHac
@ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
45335 | - | + | - | - | + | + | + | - | - | - | - | + | + | + | - | - | - | - | + | + | - | + | - | - | + | + | + | + | + | - | - | + | + | + | - | - | + | + | - | + | - | - | - | - | - | - | - | + | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123358 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 123358
- sample type: Collected before 1952
taxonmaps
- @ref: 69479
- File name: preview.99_21.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_17;97_17;98_20;99_21&stattab=map
- Last taxonomy: Bacillus
- 16S sequence: JX861887
- Sequence Identity:
- Total samples: 18201
- soil counts: 3768
- aquatic counts: 2854
- animal counts: 9674
- plant counts: 1905
Safety information
risk assessment
@ref | pathogenicity human | biosafety level | biosafety level comment |
---|---|---|---|
140 | yes, in single cases | 1 | Risk group (German classification) |
123358 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Bacillus subtilis gene for 16S rRNA, partial sequence, strain: ATCC 6633 | AB018486 | 1507 | ena | 703612 |
20218 | Bacillus subtilis strain ATCC 6633 16S ribosomal RNA gene, partial sequence | AY616162 | 560 | ena | 703612 |
20218 | Bacillus subtilis strain CCM 1999 16S ribosomal RNA gene, complete sequence | DQ207730 | 1534 | ena | 1423 |
20218 | Bacillus subtilis subsp. spizizenii strain ATCC 6633 16S ribosomal RNA gene, partial sequence | GQ911555 | 804 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlA03 16S ribosomal RNA gene, partial sequence | JF508185 | 743 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlA07 16S ribosomal RNA gene, partial sequence | JF508188 | 742 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlA10 16S ribosomal RNA gene, partial sequence | JF508191 | 739 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlA12 16S ribosomal RNA gene, partial sequence | JF508193 | 743 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlB03 16S ribosomal RNA gene, partial sequence | JF508196 | 740 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlB04 16S ribosomal RNA gene, partial sequence | JF508197 | 739 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlB07 16S ribosomal RNA gene, partial sequence | JF508200 | 713 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlC01 16S ribosomal RNA gene, partial sequence | JF508205 | 743 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlC04 16S ribosomal RNA gene, partial sequence | JF508208 | 739 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlC09 16S ribosomal RNA gene, partial sequence | JF508213 | 726 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlC10 16S ribosomal RNA gene, partial sequence | JF508214 | 727 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlC11 16S ribosomal RNA gene, partial sequence | JF508215 | 728 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlC12 16S ribosomal RNA gene, partial sequence | JF508216 | 719 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlD02 16S ribosomal RNA gene, partial sequence | JF508218 | 738 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlD03 16S ribosomal RNA gene, partial sequence | JF508219 | 744 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlD04 16S ribosomal RNA gene, partial sequence | JF508220 | 739 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlD09 16S ribosomal RNA gene, partial sequence | JF508225 | 726 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlE08 16S ribosomal RNA gene, partial sequence | JF508236 | 744 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlE10 16S ribosomal RNA gene, partial sequence | JF508238 | 744 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlF03 16S ribosomal RNA gene, partial sequence | JF508242 | 744 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlF04 16S ribosomal RNA gene, partial sequence | JF508243 | 744 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlF06 16S ribosomal RNA gene, partial sequence | JF508245 | 742 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlF10 16S ribosomal RNA gene, partial sequence | JF508248 | 745 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlF11 16S ribosomal RNA gene, partial sequence | JF508249 | 727 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlG05 16S ribosomal RNA gene, partial sequence | JF508254 | 797 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlG08 16S ribosomal RNA gene, partial sequence | JF508257 | 726 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlG11 16S ribosomal RNA gene, partial sequence | JF508260 | 738 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlH03 16S ribosomal RNA gene, partial sequence | JF508264 | 739 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlH05 16S ribosomal RNA gene, partial sequence | JF508265 | 727 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlH09 16S ribosomal RNA gene, partial sequence | JF508269 | 739 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 clone ControlH12 16S ribosomal RNA gene, partial sequence | JF508272 | 725 | ena | 703612 |
20218 | Bacillus subtilis subsp. spizizenii ATCC 6633 16S ribosomal RNA gene, partial sequence | JX861887 | 1424 | ena | 703612 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Bacillus spizizenii ATCC 6633 = JCM 2499 | GCA_006094475 | complete | ncbi | 703612 |
66792 | Bacillus spizizenii NCTC10400 | GCA_900445425 | contig | ncbi | 96241 |
66792 | Bacillus spizizenii ATCC 6633 = JCM 2499 | GCA_000177595 | contig | ncbi | 703612 |
66792 | Bacillus spizizenii ATCC 6633 = JCM 2499 | GCA_001312785 | contig | ncbi | 703612 |
66792 | Bacillus subtilis strain NRS 231 | 1423.767 | complete | patric | 1423 |
66792 | Bacillus subtilis subsp. spizizenii ATCC 6633 | 703612.3 | wgs | patric | 703612 |
66792 | Bacillus subtilis subsp. spizizenii ATCC 6633 | 703612.22 | complete | patric | 703612 |
66792 | Bacillus subtilis subsp. spizizenii JCM 2499 | 1300158.3 | wgs | patric | 703612 |
66792 | Bacillus subtilis subsp. spizizenii strain NCTC10400 | 96241.10 | wgs | patric | 96241 |
66792 | Bacillus subtilis spizizenii ATCC 6633 | 647000211 | draft | img | 703612 |
66792 | Bacillus subtilis spizizenii JCM 2499 | 2734481915 | draft | img | 1300158 |
GC content
- @ref: 140
- GC-content: 42.9
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | yes | 89.514 | no |
flagellated | yes | 89.951 | no |
gram-positive | yes | 92.854 | no |
anaerobic | no | 99.246 | yes |
aerobic | yes | 95.048 | yes |
halophile | yes | 86.937 | no |
spore-forming | yes | 97.133 | no |
glucose-util | yes | 89.811 | no |
thermophile | no | 96.999 | yes |
glucose-ferment | no | 91.279 | yes |
External links
@ref: 140
culture collection no.: DSM 347, ATCC 6633, CCM 1999, IAM 1069, NCIB 8054, NCTC 10400, WDCM 00003, CCUG 10779, JCM 20035, AHU 1038, BCRC 10447, BUCSAV 425, CECT 356, CIP 52.62, IFO 3134, IID 506, IMET 10880, JCM 2499, KCTC 2189, LMG 8197, NBRC 3134, NCIMB 8054, NRIC 1022, NRIC 1521, NRRL B-209, NRRL B-354, OUT 8351, PCI 219, RIMD 0225013, VTT E-85231, NCDO 1733, CMCC (B) 63501
straininfo link
- @ref: 70844
- straininfo: 71774
literature
- topic: Enzymology
- Pubmed-ID: 29897252
- title: Chemical composition and antibacterial activity of essential oil from fruit of Micromelum integerrimum (Buch.-Ham. ex DC.) Wight & Arn. ex M. Roem.
- authors: Kotoky R, Bordoloi M, Yadav A, Tamuli KJ, Saikia S, Dutta PP, Khound PP, Saikia SP
- journal: Nat Prod Res
- DOI: 10.1080/14786419.2018.1483923
- year: 2018
- mesh: Anti-Bacterial Agents/*isolation & purification/pharmacology, Bacteria/drug effects, Fruit/*chemistry, Gas Chromatography-Mass Spectrometry, Microbial Sensitivity Tests, Monoterpenes/analysis/isolation & purification/pharmacology, Oils, Volatile/*chemistry/pharmacology, Rutaceae/*chemistry, Sesquiterpenes/analysis/isolation & purification/pharmacology
- topic2: Phylogeny
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
140 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 347) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-347 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
41811 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/13234 | ||||
45335 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 10779) | https://www.ccug.se/strain?id=10779 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
68371 | Automatically annotated from API 50CH acid | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
70844 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID71774.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
123358 | Curators of the CIP | Collection of Institut Pasteur (CIP 52.62) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2052.62 |