Strain identifier
BacDive ID: 11869
Type strain: 
Species: Hoeflea marina
Strain Designation: Ahrens A43
Strain history: <- E. Velázquez <- LMG <- R. Ahrens and G. Rheinheimer
NCBI tax ID(s): 274592 (species)
version 8.1 (current version)
General
@ref: 6604
BacDive-ID: 11869
DSM-Number: 16791
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Hoeflea marina Ahrens A43 is a mesophilic, motile bacterium that was isolated from marine environments.
NCBI tax id
- NCBI tax id: 274592
- Matching level: species
strain history
- @ref: 6604
- history: <- E. Velázquez <- LMG <- R. Ahrens and G. Rheinheimer
doi: 10.13145/bacdive11869.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Hoeflea
- species: Hoeflea marina
- full scientific name: Hoeflea marina Peix et al. 2005
@ref: 6604
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Rhizobiaceae
genus: Hoeflea
species: Hoeflea marina
full scientific name: Hoeflea marina Peix et al. 2005
strain designation: Ahrens A43
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 93.171 | |
| 69480 | 99.994 | negative |
Culture and growth conditions
culture medium
- @ref: 6604
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 6604
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.997 |
Isolation, sampling and environmental information
isolation
- @ref: 6604
- sample type: marine environments
- geographic location: Baltic Sea
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_126930.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_488;97_557;98_640;99_126930&stattab=map
- Last taxonomy: Hoeflea marina
- 16S sequence: AY598817
- Sequence Identity:
- Total samples: 80
- soil counts: 12
- aquatic counts: 50
- animal counts: 8
- plant counts: 10
Safety information
risk assessment
- @ref: 6604
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6604
- description: Hoeflea marina 16S ribosomal RNA gene, partial sequence
- accession: AY598817
- length: 1477
- database: ena
- NCBI tax ID: 274592
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Hoeflea marina DSM 16791 | GCA_003182275 | scaffold | ncbi | 274592 |
| 66792 | Hoeflea marina strain DSM 16791 | 274592.3 | wgs | patric | 274592 |
| 66792 | Hoeflea marina DSM 16791 | 2770939490 | draft | img | 274592 |
GC content
- @ref: 6604
- GC-content: 53.1
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 57.822 | no |
| gram-positive | no | 98.23 | no |
| anaerobic | no | 92.717 | no |
| halophile | no | 85.181 | no |
| spore-forming | no | 96.142 | no |
| glucose-util | yes | 92.685 | no |
| aerobic | yes | 82.067 | no |
| thermophile | no | 99.231 | no |
| motile | yes | 91.26 | no |
| glucose-ferment | no | 89.243 | no |
External links
@ref: 6604
culture collection no.: DSM 16791, ATCC 25654, LMG 128
straininfo link
- @ref: 81086
- straininfo: 411
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 15879249 | Reclassification of Agrobacterium ferrugineum LMG 128 as Hoeflea marina gen. nov., sp. nov. | Peix A, Rivas R, Trujillo ME, Vancanneyt M, Velazquez E, Willems A | Int J Syst Evol Microbiol | 10.1099/ijs.0.63291-0 | 2005 | Alphaproteobacteria/*classification/cytology/genetics/physiology, Anti-Bacterial Agents/pharmacology, Bacterial Typing Techniques, Base Composition, Carbohydrates, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Esculin/metabolism, Fatty Acids/analysis/isolation & purification, Genes, rRNA, Hydrogen-Ion Concentration, Molecular Sequence Data, Nitrogen/metabolism, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/cytology/genetics/physiology, Sequence Analysis, DNA, Sodium Chloride/pharmacology, Temperature, Urease/analysis, Water Microbiology, beta-Galactosidase/analysis | Enzymology |
| Phylogeny | 23159752 | Hoeflea suaedae sp. nov., an endophytic bacterium isolated from the root of the halophyte Suaeda maritima. | Chung EJ, Park JA, Pramanik P, Bibi F, Jeon CO, Chung YR | Int J Syst Evol Microbiol | 10.1099/ijs.0.045484-0 | 2012 | Bacterial Typing Techniques, Base Composition, Chenopodiaceae/*microbiology, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Phyllobacteriaceae/*classification/genetics/isolation & purification, *Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Ubiquinone/analysis | Genetics |
| Phylogeny | 23314912 | Hoeflea halophila sp. nov., a novel bacterium isolated from marine sediment of the East Sea, Korea. | Jung MY, Shin KS, Kim S, Kim SJ, Park SJ, Kim JG, Cha IT, Kim MN, Rhee SK | Antonie Van Leeuwenhoek | 10.1007/s10482-013-9876-6 | 2013 | Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Hydrogen-Ion Concentration, Korea, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phyllobacteriaceae/*classification/genetics/*isolation & purification/physiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Ubiquinone/analysis, alpha-Galactosidase/metabolism | Genetics |
| Phylogeny | 25566955 | Oricola cellulosilytica gen. nov., sp. nov., a cellulose-degrading bacterium of the family Phyllobacteriaceae isolated from surface seashore water, and emended descriptions of Mesorhizobium loti and Phyllobacterium myrsinacearum. | Hameed A, Shahina M, Lai WA, Lin SY, Young LS, Liu YC, Hsu YH, Young CC | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0370-6 | 2015 | Aerobiosis, Bacterial Typing Techniques, Base Composition, Biotransformation, Cellulose/*metabolism, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Locomotion, Molecular Sequence Data, Phospholipids/analysis, Phyllobacteriaceae/*classification/genetics/*isolation & purification/metabolism, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Rec A Recombinases/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Taiwan, Transcription Factors/genetics | Metabolism |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 6604 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16791) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16791 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 81086 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID411.1 | StrainInfo: A central database for resolving microbial strain identifiers |