Strain identifier

BacDive ID: 11867

Type strain: Yes

Species: Aquamicrobium ahrensii

Strain Designation: 905/1

Strain history: <- A. Lipski, School of Biology/Chemistry, Univ. Osnabrück, Germany; 905/1 <- A. Ahrens

NCBI tax ID(s): 469551 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 8269

BacDive-ID: 11867

DSM-Number: 19730

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Aquamicrobium ahrensii 905/1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from experimental biofilter for waste gas treatment of an animal rendering plant.

NCBI tax id

  • NCBI tax id: 469551
  • Matching level: species

strain history

  • @ref: 8269
  • history: <- A. Lipski, School of Biology/Chemistry, Univ. Osnabrück, Germany; 905/1 <- A. Ahrens

doi: 10.13145/bacdive11867.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Phyllobacteriaceae
  • genus: Aquamicrobium
  • species: Aquamicrobium ahrensii
  • full scientific name: Aquamicrobium ahrensii Lipski and Kämpfer 2012

@ref: 8269

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Phyllobacteriaceae

genus: Aquamicrobium

species: Aquamicrobium ahrensii

full scientific name: Aquamicrobium ahrensii Lipski and Kämpfer 2012

strain designation: 905/1

type strain: yes

Morphology

cell morphology

  • @ref: 30532
  • gram stain: negative
  • cell shape: rod-shaped

pigmentation

  • @ref: 30532
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 8269
  • name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/545
  • composition: Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8269positivegrowth28mesophilic
30532positivegrowth30mesophilic
60512positivegrowth30mesophilic

culture pH

  • @ref: 30532
  • ability: positive
  • type: optimum
  • pH: 7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30532aerobe
60512aerobe

spore formation

  • @ref: 30532
  • spore formation: no

halophily

  • @ref: 30532
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <7 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3053216449alanine+carbon source
30532286442-oxopentanoate+carbon source
3053222653asparagine+carbon source
3053217126DL-carnitine+carbon source
3053228757fructose+carbon source
3053224265gluconate+carbon source
3053217234glucose+carbon source
3053229987glutamate+carbon source
3053217754glycerol+carbon source
3053227570histidine+carbon source
30532182404-hydroxy-L-proline+carbon source
3053224996lactate+carbon source
3053225017leucine+carbon source
3053251850methyl pyruvate+carbon source
3053226271proline+carbon source
3053217272propionate+carbon source
3053217822serine+carbon source
3053230031succinate+carbon source
3053253423tween 40+carbon source
3053253426tween 80+carbon source
3053227248urocanic acid+carbon source

enzymes

@refvalueactivityec
30532catalase+1.11.1.6
30532cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
8269experimental biofilter for waste gas treatment of an animal rendering plantLower Saxony, Lingen/BrögbernGermanyDEUEurope
60512Biofilter for treatment of waste gases (animal)NiedersachsenGermanyDEUEurope1990

isolation source categories

Cat1Cat2Cat3
#Engineered#Bioremediation#Biofilter
#Engineered#Industrial#Plant (Factory)
#Engineered#Waste#Waste gas

Safety information

risk assessment

  • @ref: 8269
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8269
  • description: Aquamicrobium ahrensii partial 16S rRNA gene, type strain 905/1T
  • accession: AM884149
  • length: 1419
  • database: ena
  • NCBI tax ID: 469551

Genome sequences

  • @ref: 66792
  • description: Aquamicrobium ahrensii DSM 19730
  • accession: 2928572089
  • assembly level: draft
  • database: img
  • NCBI tax ID: 469551

GC content

@refGC-contentmethod
826960.6high performance liquid chromatography (HPLC)
3053260.6

External links

@ref: 8269

culture collection no.: DSM 19730, CCUG 55251

straininfo link

  • @ref: 81084
  • straininfo: 400622

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22155762Aquamicrobium ahrensii sp. nov. and Aquamicrobium segne sp. nov., isolated from experimental biofilters.Lipski A, Kampfer PInt J Syst Evol Microbiol10.1099/ijs.0.038224-02011Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Filtration, Molecular Sequence Data, Nucleic Acid Hybridization, Phyllobacteriaceae/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/analysisGenetics
Phylogeny23710059Aquamicrobium aestuarii sp. nov., a marine bacterium isolated from a tidal flat.Jin HM, Kim JM, Jeon COInt J Syst Evol Microbiol10.1099/ijs.0.048561-02013Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/genetics/metabolism, Phospholipids/chemistry, Phyllobacteriaceae, *Phylogeny, Polyamines/chemistry, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification/genetics/isolation & purification, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
8269Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19730)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19730
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30532Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2686428776041
60512Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 55251)https://www.ccug.se/strain?id=55251
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
81084Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID400622.1StrainInfo: A central database for resolving microbial strain identifiers