Strain identifier
BacDive ID: 11842
Type strain: 
Species: Filifactor villosus
Strain history: <- D. N. Love, Sidney University, Department of Veterinary Pathology, New South Wales, Australia; VPB 3349 <- D. N. Love {1978}
NCBI tax ID(s): 29374 (species)
version 8.1 (current version)
General
@ref: 612
BacDive-ID: 11842
DSM-Number: 1645
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Filifactor villosus DSM 1645 is an anaerobe, mesophilic bacterium that was isolated from subcutaneous fight wound abscess of cat.
NCBI tax id
- NCBI tax id: 29374
- Matching level: species
strain history
- @ref: 612
- history: <- D. N. Love, Sidney University, Department of Veterinary Pathology, New South Wales, Australia; VPB 3349 <- D. N. Love {1978}
doi: 10.13145/bacdive11842.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Peptostreptococcaceae
- genus: Filifactor
- species: Filifactor villosus
- full scientific name: Filifactor villosus (Love et al. 1979) Collins et al. 1994
synonyms
- @ref: 20215
- synonym: Clostridium villosum
@ref: 612
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Peptostreptococcaceae
genus: Filifactor
species: Filifactor villosus
full scientific name: Filifactor villosus (Love et al. 1979) Collins et al. 1994
type strain: yes
Morphology
colony morphology
- @ref: 57181
- incubation period: 3 days
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 612 | CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) | yes | https://mediadive.dsmz.de/medium/110 | Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water |
| 612 | CHOPPED MEAT MEDIUM (DSMZ Medium 78) | yes | https://mediadive.dsmz.de/medium/78 | Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 612 | positive | growth | 37 | mesophilic |
| 57181 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 612 | anaerobe |
| 57181 | anaerobe |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 612 | subcutaneous fight wound abscess of cat | |||
| 57181 | Feline subcutaneous abscess | Australia | AUS | Australia and Oceania |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Felidae (Cat) |
| #Host Body-Site | #Other | #Abscess |
| #Host Body-Site | #Other | #Wound |
| #Host Body-Site | #Organ | #Skin, Nail, Hair |
taxonmaps
- @ref: 69479
- File name: preview.99_39461.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_635;96_18530;97_22911;98_28878;99_39461&stattab=map
- Last taxonomy: Filifactor villosus subclade
- 16S sequence: AF537211
- Sequence Identity:
- Total samples: 1519
- soil counts: 8
- aquatic counts: 11
- animal counts: 1497
- plant counts: 3
Safety information
risk assessment
- @ref: 612
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Filifactor villosus 16S rRNA gene, strain DSM 1645 | X73452 | 1514 | ena | 29374 |
| 612 | Filifactor villosus strain DSM1645 16S ribosomal RNA gene, partial sequence | AF537211 | 1450 | ena | 29374 |
External links
@ref: 612
culture collection no.: DSM 1645, ATCC 33388, NCTC 11220, CCUG 46385, VPB 3349
straininfo link
- @ref: 81060
- straininfo: 45955
literature
- topic: Phylogeny
- Pubmed-ID: 10555315
- title: Phylogenetic analysis of Fusobacterium alocis and Fusobacterium sulci based on 16S rRNA gene sequences: proposal of Filifactor alocis (Cato, Moore and Moore) comb. nov. and Eubacterium sulci (Cato, Moore and Moore) comb. nov.
- authors: Jalava J, Eerola E
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-49-4-1375
- year: 1999
- mesh: Animals, Cats, DNA, Ribosomal/genetics, Eubacterium/*classification/genetics, Fusobacterium/*classification/*genetics, Fusobacterium Infections/microbiology, *Genes, rRNA, Humans, Molecular Sequence Data, *Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/*genetics, Sequence Analysis, DNA, Terminology as Topic
- topic2: Pathogenicity
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 612 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1645) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1645 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 57181 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 46385) | https://www.ccug.se/strain?id=46385 | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 81060 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID45955.1 | StrainInfo: A central database for resolving microbial strain identifiers |