Strain identifier

BacDive ID: 11821

Type strain: Yes

Species: Desulfofundulus australicus

Strain Designation: AB33

Strain history: DSM 11792 <-- ACM 3917 <-- C. A. Love; Griffith Univ., Australia; AB33.

NCBI tax ID(s): 1121425 (strain), 1566 (species)

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General

@ref: 4492

BacDive-ID: 11821

DSM-Number: 11792

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, thermophilic, Gram-positive

description: Desulfofundulus australicus AB33 is an anaerobe, spore-forming, thermophilic bacterium that was isolated from runoff channel of bore well.

NCBI tax id

NCBI tax idMatching level
1121425strain
1566species

strain history

@refhistory
4492<- ACM; ACM 3917 <- A. C. Love, CSIRO Division of Oceanography, Hobart, Tasmania, Australia; AB33
67771<- Stefan Spring, DSM <- ACM <- CA Love, AB33
67770DSM 11792 <-- ACM 3917 <-- C. A. Love; Griffith Univ., Australia; AB33.

doi: 10.13145/bacdive11821.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Peptococcaceae
  • genus: Desulfofundulus
  • species: Desulfofundulus australicus
  • full scientific name: Desulfofundulus australicus (Love et al. 1993) Watanabe et al. 2018

  • synonyms

    • @ref: 20215
    • synonym: Desulfotomaculum australicum

@ref: 4492

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Peptococcaceae

genus: Desulfofundulus

species: Desulfofundulus australicus

full scientific name: Desulfofundulus australicus (Love et al. 1993) Watanabe et al. 2018

strain designation: AB33

type strain: yes

Morphology

cell morphology

@refgram stainmotilityconfidence
67771positive
69480yes94.417
69480positive100

Culture and growth conditions

culture medium

  • @ref: 4492
  • name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/63
  • composition: Name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63) Composition: MgSO4 x 7 H2O 2.0 g/l Na-DL-lactate 2.0 g/l NH4Cl 1.0 g/l Yeast extract 1.0 g/l Na2SO4 1.0 g/l FeSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l CaCl2 x 2 H2O 0.1 g/l Na-thioglycolate 0.1 g/l Ascorbic acid 0.1 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

@refgrowthtypetemperaturerangeconfidence
4492positivegrowth65thermophilic
67770positivegrowth65thermophilic
67771positivegrowth65thermophilic
69480thermophilic100

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
4492anaerobe
67771anaerobe
69480anaerobe99.495

spore formation

@reftype of sporespore formationconfidence
67771sporeyes
69480yes100

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
4492runoff channel of bore wellGreat Artesian basinAustraliaAUSAustralia and Oceania
67771From runoff channel of bore wellGreat Artesian basinAustraliaAUSAustralia and Oceania
67770Runoff channels formed by the bore wells of the non-volcanically heated waters of the Great Artesian WatersAustraliaAUSAustralia and Oceania

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial#Engineered product
#Engineered#Waste#Wastewater

Safety information

risk assessment

  • @ref: 4492
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
4492Desulfotomaculum australicum 16 S ribosomal RNAM966651565ena1121425
67770Desulfofundulus australicus DSM 11792 strain AB33 16S ribosomal RNA, partial sequenceNR_0370081561nuccore1121425

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Desulfotomaculum australicum DSM 11792 strain DSM 117921121425.3wgspatric1121425
66792Desulfofundulus australicus DSM 117922582580749draftimg1121425
67770Desulfofundulus australicus DSM 11792GCA_900129285scaffoldncbi1121425

GC content

  • @ref: 4492
  • GC-content: 48.1
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes88no
motileyes81.695no
flagellatedno95.53no
gram-positiveno82.39yes
anaerobicyes99.72yes
aerobicno97.572no
halophileno94.28no
spore-formingyes93.079yes
thermophileyes100yes
glucose-utilyes78.097no
glucose-fermentno82.5no

External links

@ref: 4492

culture collection no.: DSM 11792, ACM 3917, KCTC 15817, JCM 34022

straininfo link

  • @ref: 81039
  • straininfo: 49182

literature

  • topic: Phylogeny
  • Pubmed-ID: 30605072
  • title: Desulfofundulus australicus Wantanabe et al. 2018 is represented by a single deposit is one internationally operating collection.
  • authors: Tindall BJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003201
  • year: 2019
  • mesh: Australia, Peptococcaceae/*classification, *Phylogeny

Reference

@idauthorscataloguedoi/urltitle
4492Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11792)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11792
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
81039Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49182.1StrainInfo: A central database for resolving microbial strain identifiers