Strain identifier
BacDive ID: 11820
Type strain: 
Species: Desulfohalotomaculum halophilum
Strain history: <- P. Caumette, Université Bordeaux, Laboratoire d'Océanographie Biologique, Arcachon, France; SEBR 3139 <- M. Magot {1988}
NCBI tax ID(s): 1121427 (strain), 57172 (species)
version 8.1 (current version)
General
@ref: 4421
BacDive-ID: 11820
DSM-Number: 11559
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Desulfohalotomaculum halophilum DSM 11559 is an anaerobe, mesophilic bacterium that was isolated from oil-field brine.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1121427 | strain |
| 57172 | species |
strain history
- @ref: 4421
- history: <- P. Caumette, Université Bordeaux, Laboratoire d'Océanographie Biologique, Arcachon, France; SEBR 3139 <- M. Magot {1988}
doi: 10.13145/bacdive11820.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Peptococcaceae
- genus: Desulfohalotomaculum
- species: Desulfohalotomaculum halophilum
- full scientific name: Desulfohalotomaculum halophilum (Tardy-Jacquenod et al. 1998) Watanabe et al. 2018
synonyms
- @ref: 20215
- synonym: Desulfotomaculum halophilum
@ref: 4421
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Peptococcaceae
genus: Desulfohalotomaculum
species: Desulfohalotomaculum halophilum
full scientific name: Desulfohalotomaculum halophilum (Tardy-Jacquenod et al. 1998) Watanabe et al. 2018
type strain: yes
Culture and growth conditions
culture medium
- @ref: 4421
- name: DESULFOHALOTOMACULUM MEDIUM (DSMZ Medium 815)
- growth: yes
- link: https://mediadive.dsmz.de/medium/815
- composition: Name: DESULFOHALOTOMACULUM MEDIUM (DSMZ Medium 815) Composition: Iron powder 100.0 g/l NaCl 40.0 g/l MgCl2 x 6 H2O 8.0 g/l CaCl2 x 2 H2O 6.0 g/l Na-L-lactate 3.6 g/l MOPS 3.0 g/l Na2SO4 3.0 g/l KCl 2.0 g/l Yeast extract 1.0 g/l Na2CO3 0.5 g/l NH4Cl 0.3 g/l KH2PO4 0.2 g/l SrCl2 x 6 H2O 0.1 g/l Na2-EDTA x 2 H2O 0.0052 g/l FeCl2 x 4 H2O 0.0015 g/l Sodium resazurin 0.0005 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water
culture temp
- @ref: 4421
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 4421
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 4421
- sample type: oil-field brine
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Oil reservoir |
| #Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_41836.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1366;96_19373;97_24044;98_30414;99_41836&stattab=map
- Last taxonomy: Desulfohalotomaculum halophilum subclade
- 16S sequence: U88891
- Sequence Identity:
- Total samples: 565
- soil counts: 92
- aquatic counts: 110
- animal counts: 326
- plant counts: 37
Safety information
risk assessment
- @ref: 4421
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4421
- description: Desulfotomaculum halophilum strain SEBR 3139 16S ribosomal RNA gene, partial sequence
- accession: U88891
- length: 1526
- database: ena
- NCBI tax ID: 1121427
GC content
- @ref: 4421
- GC-content: 56.3
- method: high performance liquid chromatography (HPLC)
External links
@ref: 4421
culture collection no.: DSM 11559, ATCC 700650, SEBR 3139
straininfo link
- @ref: 81038
- straininfo: 44057
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 9731271 | Desulfotomaculum halophilum sp. nov., a halophilic sulfate-reducing bacterium isolated from oil production facilities. | Tardy-Jacquenod C, Magot M, Patel BK, Matheron R, Caumette P | Int J Syst Bacteriol | 10.1099/00207713-48-2-333 | 1998 | Base Sequence, Gram-Positive Endospore-Forming Rods/*classification/genetics/isolation & purification/physiology, Molecular Sequence Data, Petroleum, Phylogeny, RNA, Bacterial, RNA, Ribosomal, 16S, Sequence Analysis, RNA, Sulfur-Reducing Bacteria/*classification/genetics/isolation & purification/physiology | Enzymology |
| Phylogeny | 24078017 | Desulfotomaculum tongense sp. nov., a moderately thermophilic sulfate-reducing bacterium isolated from a hydrothermal vent sediment collected from the Tofua Arc in the Tonga Trench. | Cha IT, Roh SW, Kim SJ, Hong HJ, Lee HW, Lim WT, Rhee SK | Antonie Van Leeuwenhoek | 10.1007/s10482-013-0040-0 | 2013 | Aerobiosis, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Desulfotomaculum/*classification/genetics/*isolation & purification/physiology, Fatty Acids/analysis, Flagella/physiology, Geologic Sediments/*microbiology, Hydrogen/metabolism, Hydrogen-Ion Concentration, Hydrothermal Vents, Microscopy, Electron, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, Pyruvic Acid/metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Sulfur Compounds/metabolism, Temperature, Tonga | Metabolism |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4421 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11559) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11559 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 81038 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID44057.1 | StrainInfo: A central database for resolving microbial strain identifiers |