Strain identifier
BacDive ID: 11819
Type strain:
Species: Desulforamulus aeronauticus
Strain Designation: 9
Strain history: <- A. Hagenauer, Daimler Benz AG Forschungszentrum, Ulm, Germany; 9 <- A. Hagenauer {1992}
NCBI tax ID(s): 53343 (species)
General
@ref: 3916
BacDive-ID: 11819
DSM-Number: 10349
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, motile
description: Desulforamulus aeronauticus 9 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from corroded aluminium alloy in an aircraft.
NCBI tax id
- NCBI tax id: 53343
- Matching level: species
strain history
- @ref: 3916
- history: <- A. Hagenauer, Daimler Benz AG Forschungszentrum, Ulm, Germany; 9 <- A. Hagenauer {1992}
doi: 10.13145/bacdive11819.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Peptococcaceae
- genus: Desulforamulus
- species: Desulforamulus aeronauticus
- full scientific name: Desulforamulus aeronauticus (Hagenauer et al. 1997) Watanabe et al. 2021
synonyms
- @ref: 20215
- synonym: Desulfotomaculum aeronauticum
@ref: 3916
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Peptococcaceae
genus: Desulfotomaculum
species: Desulfotomaculum aeronauticum
full scientific name: Desulfotomaculum aeronauticum Hagenauer et al. 1997
strain designation: 9
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 95.59 | |
69480 | 100 | positive |
colony morphology
- @ref: 3916
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 3916
- name: DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641)
- growth: yes
- link: https://mediadive.dsmz.de/medium/641
- composition: Name: DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641; with strain-specific modifications) Composition: Na pyruvate 2.49252 g/l Na2SO4 1.99402 g/l Na2S2O3 x 5 H2O 0.997009 g/l MgSO4 x 7 H2O 0.997009 g/l NH4Cl 0.997009 g/l Yeast extract 0.997009 g/l Na2CO3 0.997009 g/l KH2PO4 0.498504 g/l Na2S x 9 H2O 0.0997009 g/l CaCl2 x 2 H2O 0.0997009 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
- @ref: 3916
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance | confidence |
---|---|---|
3916 | anaerobe | |
69480 | anaerobe | 98.649 |
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 100
Isolation, sampling and environmental information
isolation
- @ref: 3916
- sample type: corroded aluminium alloy in an aircraft
isolation source categories
- Cat1: #Engineered
- Cat2: #Industrial
- Cat3: #Engineered product
taxonmaps
- @ref: 69479
- File name: preview.99_12126.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15838;96_1353;97_7390;98_9111;99_12126&stattab=map
- Last taxonomy: Desulfotomaculum aeronauticum subclade
- 16S sequence: X98407
- Sequence Identity:
- Total samples: 146
- soil counts: 41
- aquatic counts: 50
- animal counts: 45
- plant counts: 10
Safety information
risk assessment
- @ref: 3916
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 3916
- description: D.aeronauticum 16S rRNA gene
- accession: X98407
- length: 1476
- database: ena
- NCBI tax ID: 53343
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Desulforamulus aeronauticus DSM 10349 | GCA_900142375 | scaffold | ncbi | 1121421 |
66792 | Desulfotomaculum aeronauticum DSM 10349 | 1121421.3 | wgs | patric | 1121421 |
66792 | Desulfotomaculum aeronauticum DSM 10349 | 2585428189 | draft | img | 1121421 |
GC content
- @ref: 3916
- GC-content: 43.8
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 75 | no |
motile | yes | 82.672 | no |
flagellated | no | 70.819 | no |
gram-positive | no | 74.895 | no |
anaerobic | yes | 98.789 | no |
aerobic | no | 94.092 | no |
halophile | no | 96.463 | no |
spore-forming | yes | 93.831 | no |
thermophile | no | 93.896 | no |
glucose-util | yes | 78.135 | no |
glucose-ferment | no | 83.859 | no |
External links
@ref: 3916
culture collection no.: DSM 10349, NBRC 112752
straininfo link
- @ref: 81037
- straininfo: 48818
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
3916 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10349) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10349 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
81037 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48818.1 | StrainInfo: A central database for resolving microbial strain identifiers |