Strain identifier

BacDive ID: 11819

Type strain: Yes

Species: Desulforamulus aeronauticus

Strain Designation: 9

Strain history: <- A. Hagenauer, Daimler Benz AG Forschungszentrum, Ulm, Germany; 9 <- A. Hagenauer {1992}

NCBI tax ID(s): 53343 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 3916

BacDive-ID: 11819

DSM-Number: 10349

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, motile

description: Desulforamulus aeronauticus 9 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from corroded aluminium alloy in an aircraft.

NCBI tax id

  • NCBI tax id: 53343
  • Matching level: species

strain history

  • @ref: 3916
  • history: <- A. Hagenauer, Daimler Benz AG Forschungszentrum, Ulm, Germany; 9 <- A. Hagenauer {1992}

doi: 10.13145/bacdive11819.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Peptococcaceae
  • genus: Desulforamulus
  • species: Desulforamulus aeronauticus
  • full scientific name: Desulforamulus aeronauticus (Hagenauer et al. 1997) Watanabe et al. 2021
  • synonyms

    • @ref: 20215
    • synonym: Desulfotomaculum aeronauticum

@ref: 3916

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Peptococcaceae

genus: Desulfotomaculum

species: Desulfotomaculum aeronauticum

full scientific name: Desulfotomaculum aeronauticum Hagenauer et al. 1997

strain designation: 9

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes95.59
69480100positive

colony morphology

  • @ref: 3916
  • incubation period: 3-7 days

Culture and growth conditions

culture medium

  • @ref: 3916
  • name: DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/641
  • composition: Name: DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641; with strain-specific modifications) Composition: Na pyruvate 2.49252 g/l Na2SO4 1.99402 g/l Na2S2O3 x 5 H2O 0.997009 g/l MgSO4 x 7 H2O 0.997009 g/l NH4Cl 0.997009 g/l Yeast extract 0.997009 g/l Na2CO3 0.997009 g/l KH2PO4 0.498504 g/l Na2S x 9 H2O 0.0997009 g/l CaCl2 x 2 H2O 0.0997009 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

culture temp

  • @ref: 3916
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
3916anaerobe
69480anaerobe98.649

spore formation

  • @ref: 69480
  • spore formation: yes
  • confidence: 100

Isolation, sampling and environmental information

isolation

  • @ref: 3916
  • sample type: corroded aluminium alloy in an aircraft

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Industrial
  • Cat3: #Engineered product

taxonmaps

  • @ref: 69479
  • File name: preview.99_12126.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15838;96_1353;97_7390;98_9111;99_12126&stattab=map
  • Last taxonomy: Desulfotomaculum aeronauticum subclade
  • 16S sequence: X98407
  • Sequence Identity:
  • Total samples: 146
  • soil counts: 41
  • aquatic counts: 50
  • animal counts: 45
  • plant counts: 10

Safety information

risk assessment

  • @ref: 3916
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 3916
  • description: D.aeronauticum 16S rRNA gene
  • accession: X98407
  • length: 1476
  • database: ena
  • NCBI tax ID: 53343

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Desulforamulus aeronauticus DSM 10349GCA_900142375scaffoldncbi1121421
66792Desulfotomaculum aeronauticum DSM 103491121421.3wgspatric1121421
66792Desulfotomaculum aeronauticum DSM 103492585428189draftimg1121421

GC content

  • @ref: 3916
  • GC-content: 43.8
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes75no
motileyes82.672no
flagellatedno70.819no
gram-positiveno74.895no
anaerobicyes98.789no
aerobicno94.092no
halophileno96.463no
spore-formingyes93.831no
thermophileno93.896no
glucose-utilyes78.135no
glucose-fermentno83.859no

External links

@ref: 3916

culture collection no.: DSM 10349, NBRC 112752

straininfo link

  • @ref: 81037
  • straininfo: 48818

Reference

@idauthorscataloguedoi/urltitle
3916Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10349)https://www.dsmz.de/collection/catalogue/details/culture/DSM-10349
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
81037Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID48818.1StrainInfo: A central database for resolving microbial strain identifiers