Strain identifier
BacDive ID: 118
Type strain: 
Species: Acidithiobacillus ferrooxidans
Strain history: <- ATCC <- NCIMB <- P. Sneath <- W. W. Leathen (Ferrobacillus ferrooxidans)
NCBI tax ID(s): 243159 (strain), 920 (species)
version 8.1 (current version)
General
@ref: 5597
BacDive-ID: 118
DSM-Number: 14882
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Acidithiobacillus ferrooxidans DSM 14882 is a mesophilic, Gram-negative bacterium that was isolated from acid, bituminous coal mine effluent.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 920 | species |
| 243159 | strain |
strain history
- @ref: 5597
- history: <- ATCC <- NCIMB <- P. Sneath <- W. W. Leathen (Ferrobacillus ferrooxidans)
doi: 10.13145/bacdive118.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Acidithiobacillia
- order: Acidithiobacillales
- family: Acidithiobacillaceae
- genus: Acidithiobacillus
- species: Acidithiobacillus ferrooxidans
- full scientific name: Acidithiobacillus ferrooxidans (Temple and Colmer 1951) Kelly and Wood 2000
synonyms
- @ref: 20215
- synonym: Thiobacillus ferrooxidans
@ref: 5597
domain: Bacteria
phylum: Proteobacteria
class: Acidithiobacillia
order: Acidithiobacillales
family: Acidithiobacillaceae
genus: Acidithiobacillus
species: Acidithiobacillus ferrooxidans
full scientific name: Acidithiobacillus ferrooxidans (Temple and Colmer 1951) Kelly and Wood 2000
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.999
colony morphology
- @ref: 5597
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 5597
- name: LEPTOSPIRILLUM (HH) MEDIUM (DSMZ Medium 882)
- growth: yes
- link: https://mediadive.dsmz.de/medium/882
- composition: Name: LEPTOSPIRILLUM (HH) MEDIUM (DSMZ Medium 882) Composition: FeSO4 x 7 H2O 19.98 g/l CaCl2 x 2 H2O 0.146853 g/l (NH4)2SO4 0.131868 g/l MgCl2 x 6 H2O 0.0529471 g/l KH2PO4 0.0269731 g/l MnCl2 x 4 H2O 7.59241e-05 g/l ZnCl2 6.79321e-05 g/l CuCl2 x 2 H2O 6.69331e-05 g/l CoCl2 x 6 H2O 6.39361e-05 g/l H3BO3 3.0969e-05 g/l Na2MoO4 9.99001e-06 g/l H2SO4 Distilled water
culture temp
- @ref: 5597
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.999 |
Isolation, sampling and environmental information
isolation
- @ref: 5597
- sample type: acid, bituminous coal mine effluent
- geographic location: Pennsylvania
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Other | #Mine |
| #Condition | #Acidic |
taxonmaps
- @ref: 69479
- File name: preview.99_1131.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_163;96_544;97_628;98_885;99_1131&stattab=map
- Last taxonomy: Acidithiobacillus
- 16S sequence: AF465604
- Sequence Identity:
- Total samples: 673
- soil counts: 100
- aquatic counts: 493
- animal counts: 74
- plant counts: 6
Safety information
risk assessment
- @ref: 5597
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Acidithiobacillus ferrooxidans gene, 16S-23S rDNA region, strain: ATCC 23270 | AB189135 | 441 | ena | 920 |
| 20218 | Acidithiobacillus ferrooxidans 16S ribosomal RNA gene, partial sequence | AF329205 | 1451 | ena | 920 |
| 20218 | Acidithiobacillus ferrooxidans strain ATCC23270 16S ribosomal RNA gene, partial sequence | AF465604 | 1461 | ena | 920 |
| 20218 | Acidithiobacillus ferrooxidans strain ATCC 23270 16S ribosomal RNA gene, partial sequence; intergenic spacer, tRNA-Ile (trnI) and tRNA-Ala (trnA) genes, complete sequence; and 23S ribosomal RNA gene, partial sequence | AF512809 | 497 | ena | 920 |
| 20218 | Acidithiobacillus ferrooxidans partial 16S rRNA gene, strain ATCC23270T | AJ278718 | 1342 | ena | 920 |
| 20218 | Acidithiobacillus ferrooxidans strain ATCC 23270 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | EF059766 | 610 | ena | 920 |
| 20218 | Thiobacillus ferrooxidans 16S rRNA sequence | M79405 | 274 | ena | 920 |
| 20218 | Thiobacillus ferrooxidans 16S rRNA sequence | M79406 | 312 | ena | 920 |
| 5597 | Thiobacillus ferrooxidans 16S rRNA sequence | M79404 | 279 | ena | 920 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acidithiobacillus ferrooxidans ATCC 23270 | GCA_000021485 | complete | ncbi | 243159 |
| 66792 | Acidithiobacillus ferrooxidans ATCC 23270 | 243159.4 | complete | patric | 243159 |
| 66792 | Acidithiobacillus ferrooxidans ATCC 23270 | 643348501 | complete | img | 243159 |
GC content
- @ref: 5597
- GC-content: 58-59
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 78.797 | no |
| flagellated | no | 98.392 | no |
| gram-positive | no | 97.761 | no |
| anaerobic | no | 94.981 | no |
| halophile | no | 88.894 | no |
| spore-forming | no | 95.493 | no |
| thermophile | no | 96.922 | yes |
| glucose-util | yes | 55.071 | no |
| aerobic | no | 82.791 | no |
| glucose-ferment | no | 85.826 | no |
External links
@ref: 5597
culture collection no.: DSM 14882, ATCC 23270, NCIMB 8455
straininfo link
- @ref: 69801
- straininfo: 37980
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 2275538 | Thiobacillus ferrooxidans, a facultative hydrogen oxidizer. | Drobner E, Huber H, Stetter KO | Appl Environ Microbiol | 10.1128/aem.56.9.2922-2923.1990 | 1990 | DNA, Bacterial/genetics, Ferrous Compounds/metabolism, Hydrogen/*metabolism, Oxidation-Reduction, Sequence Homology, Nucleic Acid, Species Specificity, Thiobacillus/genetics/growth & development/*metabolism | Phylogeny |
| Enzymology | 8824625 | Sulfur-binding protein of flagella of Thiobacillus ferrooxidans. | Ohmura N, Tsugita K, Koizumi JI, Saika H | J Bacteriol | 10.1128/jb.178.19.5776-5780.1996 | 1996 | *Bacterial Adhesion, Bacterial Proteins/*isolation & purification, Carbon Disulfide, Cell Compartmentation, Cell Membrane/chemistry, Flagella/*chemistry/ultrastructure, Iron/metabolism, Membrane Proteins/isolation & purification, Solubility, Sulfhydryl Compounds/isolation & purification, Sulfur/*metabolism, Thiobacillus/*chemistry/ultrastructure | Phylogeny |
| Genetics | 10737802 | Functional analysis of gapped microbial genomes: amino acid metabolism of Thiobacillus ferrooxidans. | Selkov E, Overbeek R, Kogan Y, Chu L, Vonstein V, Holmes D, Silver S, Haselkorn R, Fonstein M | Proc Natl Acad Sci U S A | 10.1073/pnas.97.7.3509 | 2000 | Amino Acids/*metabolism, Chromosomes, Bacterial, Cloning, Molecular, *Genome, Bacterial, Molecular Sequence Data, Open Reading Frames, Thiobacillus/genetics/*metabolism | Metabolism |
| Enzymology | 10852719 | Characterization of a new dihemic c(4)-type cytochrome isolated from Thiobacillus ferrooxidans. | Giudici-Orticoni MT, Leroy G, Nitschke W, Bruschi M | Biochemistry | 10.1021/bi992846p | 2000 | Amino Acid Sequence, Amino Acids/analysis, Azurin/analogs & derivatives/metabolism, Cytochrome c Group/*chemistry, Electron Spin Resonance Spectroscopy, Electron Transport, Kinetics, Mass Spectrometry, Molecular Sequence Data, Oxidation-Reduction, Sequence Homology, Amino Acid, Spectrophotometry, Thiobacillus/*chemistry | Genetics |
| Metabolism | 11916703 | An exported rhodanese-like protein is induced during growth of Acidithiobacillus ferrooxidans in metal sulfides and different sulfur compounds. | Ramirez P, Toledo H, Guiliani N, Jerez CA | Appl Environ Microbiol | 10.1128/AEM.68.4.1837-1845.2002 | 2002 | Amino Acid Sequence, Bacterial Proteins/*biosynthesis/chemistry/genetics/metabolism, Culture Media, Enzyme Induction, Gammaproteobacteria/enzymology/genetics/*growth & development, *Gene Expression Regulation, Bacterial, Molecular Sequence Data, Sequence Analysis, DNA, Sulfides/*metabolism, Sulfur Compounds/*metabolism, Thiosulfate Sulfurtransferase/*biosynthesis/chemistry/genetics/metabolism, Zinc Compounds/*metabolism | Cultivation |
| Cultivation | 12007804 | Cytochromes c of Acidithiobacillus ferrooxidans. | Yarzabal A, Brasseur G, Bonnefoy V | FEMS Microbiol Lett | 10.1111/j.1574-6968.2002.tb11130.x | 2002 | Cell Membrane/chemistry, Culture Media, Cytochrome c Group/*analysis, Gammaproteobacteria/*chemistry/genetics/growth & development, Genome, Bacterial, Iron, Sulfur | Genetics |
| Enzymology | 12070689 | Two Copies of form I RuBisCO genes in Acidithiobacillus ferrooxidans ATCC 23270. | Heinhorst S, Baker SH, Johnson DR, Davies PS, Cannon GC, Shively JM | Curr Microbiol | 10.1007/s00284-001-0094-5 | 2002 | Gammaproteobacteria/enzymology/*genetics, Gene Transfer, Horizontal, Restriction Mapping, Ribulose-Bisphosphate Carboxylase/*genetics | |
| Enzymology | 12206888 | The bc(1) complex of the iron-grown acidophilic chemolithotrophic bacterium Acidithiobacillus ferrooxidans functions in the reverse but not in the forward direction. Is there a second bc(1) complex? | Brasseur G, Bruscella P, Bonnefoy V, Lemesle-Meunier D | Biochim Biophys Acta | 10.1016/s0005-2728(02)00251-7 | 2002 | Acetobacteraceae/*enzymology/genetics/growth & development, Amino Acid Sequence, Cytochrome b Group/chemistry/genetics, Electron Transport, Electron Transport Complex III/chemistry/*metabolism, Hydrogen-Ion Concentration, Iron, Iron-Sulfur Proteins/chemistry/genetics, Isoenzymes/chemistry/metabolism, Molecular Sequence Data, Sequence Alignment, Sulfur | Metabolism |
| Metabolism | 12588097 | Numerical modeling of ferrous-ion oxidation rate in Acidithiobacillus ferrooxidans ATCC 23270: optimization of culture conditions through statistically designed experiments. | Abdel-Fattah YR, Abdel-Fattah WR, Zamilpa R, Pierce JR | Acta Microbiol Pol | 2002 | Calcium Compounds/metabolism, Culture Media, Fermentation, Ferrous Compounds/*metabolism, Hydrogen-Ion Concentration, *Models, Biological, *Models, Statistical, Nitrates/metabolism, Oxidation-Reduction, Potassium Chloride/metabolism, Thiobacillus/*metabolism, Trace Elements/metabolism | Cultivation | |
| Phylogeny | 12656161 | Phylogenetic heterogeneity of the species Acidithiobacillus ferrooxidans. | Karavaiko GI, Turova TP, Kondrat'eva TF, Lysenko AM, Kolganova TV, Ageeva SN, Muntyan LN, Pivovarova TA | Int J Syst Evol Microbiol | 10.1099/ijs.0.02319-0 | 2003 | Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Ecosystem, Electrophoresis, Gel, Pulsed-Field, Genome, Bacterial, Minerals, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Thiobacillus/*classification/*genetics/isolation & purification | Genetics |
| Metabolism | 15294777 | Differential protein expression during growth of Acidithiobacillus ferrooxidans on ferrous iron, sulfur compounds, or metal sulfides. | Ramirez P, Guiliani N, Valenzuela L, Beard S, Jerez CA | Appl Environ Microbiol | 10.1128/AEM.70.8.4491-4498.2004 | 2004 | Acidithiobacillus/genetics/*growth & development/metabolism, Amino Acid Sequence, Bacterial Proteins/chemistry/genetics/metabolism, Electrophoresis, Gel, Two-Dimensional, Ferrous Compounds/*metabolism, *Gene Expression Regulation, Bacterial, Iron/metabolism, Metals/chemistry/metabolism, Molecular Sequence Data, Proteome, Sulfides/chemistry/*metabolism, Sulfur Compounds/*metabolism | Enzymology |
| Phylogeny | 15313256 | Differentiation of Acidithiobacillus ferrooxidans and A. thiooxidans strains based on 16S-23S rDNA spacer polymorphism analysis. | Bergamo RF, Novo MT, Verissimo RV, Paulino LC, Stoppe NC, Sato MI, Manfio GP, Prado PI, Garcia O Jr, Ottoboni LM | Res Microbiol | 10.1016/j.resmic.2004.03.009 | 2004 | Bacterial Typing Techniques, DNA, Ribosomal/*analysis/genetics, DNA, Ribosomal Spacer/*analysis/genetics, Gammaproteobacteria/*classification/genetics/isolation & purification, Phylogeny, Polymerase Chain Reaction, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 23S/genetics, *Ribotyping, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid | Transcriptome |
| Metabolism | 15345397 | Copper ions stimulate polyphosphate degradation and phosphate efflux in Acidithiobacillus ferrooxidans. | Alvarez S, Jerez CA | Appl Environ Microbiol | 10.1128/AEM.70.9.5177-5182.2004 | 2004 | Acidithiobacillus/drug effects/growth & development/*metabolism/ultrastructure, Biotransformation, Copper Sulfate/*pharmacology, Culture Media, Kinetics, Phosphates/*metabolism, Polyphosphates/*metabolism | Cultivation |
| Metabolism | 15805776 | Identification of putative sulfurtransferase genes in the extremophilic Acidithiobacillus ferrooxidans ATCC 23270 genome: structural and functional characterization of the proteins. | Acosta M, Beard S, Ponce J, Vera M, Mobarec JC, Jerez CA | OMICS | 10.1089/omi.2005.9.13 | 2005 | Acidithiobacillus/*enzymology/*genetics, Amino Acid Sequence, Binding Sites, Catalytic Domain, Cell-Free System, Cloning, Molecular, Computational Biology, Crystallography, X-Ray, Cyanides/metabolism, Cysteine/analogs & derivatives/chemistry/metabolism, DNA Primers/chemistry, Escherichia coli/metabolism, *Genome, Bacterial, Iron-Sulfur Proteins/chemistry, Models, Genetic, Models, Molecular, Molecular Sequence Data, Oligonucleotide Array Sequence Analysis, Open Reading Frames, Oxygen/chemistry, Polymerase Chain Reaction, RNA, Messenger/metabolism, Sequence Homology, Amino Acid, Species Specificity, Static Electricity, Sulfotransferases/*genetics, Thiosulfate Sulfurtransferase/genetics/metabolism, Thiosulfates/metabolism | Genetics |
| Metabolism | 15870452 | The HiPIP from the acidophilic Acidithiobacillus ferrooxidans is correctly processed and translocated in Escherichia coli, in spite of the periplasm pH difference between these two micro-organisms. | Bruscella P, Cassagnaud L, Ratouchniak J, Brasseur G, Lojou E, Amils R, Bonnefoy V | Microbiology (Reading) | 10.1099/mic.0.27476-0 | 2005 | Acidithiobacillus/classification/*genetics/*metabolism/physiology, Amino Acid Sequence, Bacterial Proteins, Cloning, Molecular, Escherichia coli/genetics/*metabolism/physiology, Escherichia coli Proteins/metabolism, Hydrogen-Ion Concentration, Iron-Sulfur Proteins/genetics/*metabolism, Membrane Transport Proteins/metabolism, Molecular Sequence Data, Oxidoreductases/chemistry/genetics/metabolism, Periplasm/metabolism/*physiology, Photosynthetic Reaction Center Complex Proteins/genetics/*metabolism, Sequence Analysis, DNA | Enzymology |
| Metabolism | 15942007 | The ferric iron uptake regulator (Fur) from the extreme acidophile Acidithiobacillus ferrooxidans. | Quatrini R, Lefimil C, Holmes DS, Jedlicki E | Microbiology (Reading) | 10.1099/mic.0.27581-0 | 2005 | Acidithiobacillus/*genetics/metabolism, Amino Acid Motifs/genetics, Bacterial Proteins/*genetics/immunology/metabolism, Cross Reactions, DNA, Bacterial/chemistry/genetics, Electrophoretic Mobility Shift Assay, Escherichia coli/genetics, Gene Deletion, Genetic Complementation Test, Molecular Sequence Data, Protein Binding, Repressor Proteins/*genetics/immunology/metabolism, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Trans-Activators/*genetics/metabolism | Genetics |
| Metabolism | 17185539 | Differential expression of two bc1 complexes in the strict acidophilic chemolithoautotrophic bacterium Acidithiobacillus ferrooxidans suggests a model for their respective roles in iron or sulfur oxidation. | Bruscella P, Appia-Ayme C, Levican G, Ratouchniak J, Jedlicki E, Holmes DS, Bonnefoy V | Microbiology (Reading) | 10.1099/mic.0.2006/000067-0 | 2007 | Acidithiobacillus/*genetics/*metabolism, Electron Transport, Electron Transport Complex III/*genetics, *Gene Expression Regulation, Bacterial, Genes, Bacterial/*genetics, Iron/*metabolism, Molecular Sequence Data, Operon/*genetics, Oxidation-Reduction, Sulfur/*metabolism | Genetics |
| Metabolism | 17470358 | The IscA from Acidithiobacillus ferrooxidans is an iron-sulfur protein which assemble the [Fe4S4] cluster with intracellular iron and sulfur. | Zeng J, Geng M, Jiang H, Liu Y, Liu J, Qiu G | Arch Biochem Biophys | 10.1016/j.abb.2007.03.024 | 2007 | Acidithiobacillus/genetics/*metabolism, Amino Acid Sequence, Bacterial Proteins/*chemistry/genetics/metabolism, Cloning, Molecular, Cysteine/chemistry, Electron Spin Resonance Spectroscopy, Iron/metabolism, Iron-Sulfur Proteins/*chemistry/genetics/metabolism, Models, Molecular, Molecular Sequence Data, Mutation, Sequence Alignment, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Spectrophotometry, Ultraviolet, Sulfur/metabolism | Enzymology |
| Enzymology | 17660944 | Expression, purification and characterization of a cysteine desulfurase, IscS, from Acidithiobacillus ferrooxidans. | Zeng J, Zhang Y, Liu Y, Zhang X, Xia L, Liu J, Qiu G | Biotechnol Lett | 10.1007/s10529-007-9491-6 | 2007 | Acidithiobacillus/*enzymology/genetics, Amino Acid Sequence, Apoenzymes/metabolism, Carbon-Sulfur Lyases/chemistry/genetics/*isolation & purification/*metabolism, Cloning, Molecular, Electrophoresis, Polyacrylamide Gel, Holoenzymes/metabolism, Models, Molecular, Molecular Sequence Data, Recombinant Proteins/isolation & purification/metabolism, Sequence Alignment, Spectrophotometry, Ultraviolet | Metabolism |
| Biotechnology | 17904676 | Identification of a gene encoding a tetrathionate hydrolase in Acidithiobacillus ferrooxidans. | Kanao T, Kamimura K, Sugio T | J Biotechnol | 10.1016/j.jbiotec.2007.08.030 | 2007 | Acidithiobacillus/*enzymology/*genetics/growth & development, Base Sequence, Biotechnology, DNA Primers/genetics, DNA, Bacterial/genetics, Dimerization, Escherichia coli/genetics, *Genes, Bacterial, Hydrolases/chemistry/*genetics/metabolism, Molecular Sequence Data, Molecular Weight, Protein Structure, Quaternary, Species Specificity, Tetrathionic Acid/metabolism | Metabolism |
| Enzymology | 17909890 | Expression, purification, and characterization of a [Fe2S2] cluster containing ferredoxin from Acidithiobacillus ferrooxidans. | Zeng J, Huang X, Liu Y, Liu J, Qiu G | Curr Microbiol | 10.1007/s00284-007-9025-4 | 2007 | Acidithiobacillus thiooxidans/*enzymology/genetics/metabolism, Amino Acid Sequence, Bacterial Proteins/chemistry/genetics/isolation & purification/metabolism, Chromatography, Affinity, Cloning, Molecular, Escherichia coli/*enzymology/genetics, *Ferredoxins/chemistry/genetics/isolation & purification/metabolism, *Iron-Sulfur Proteins/chemistry/genetics/isolation & purification/metabolism, Molecular Sequence Data, Mutagenesis, Site-Directed, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization | Metabolism |
| 17911085 | Periplasmic proteins of the extremophile Acidithiobacillus ferrooxidans: a high throughput proteomics analysis. | Chi A, Valenzuela L, Beard S, Mackey AJ, Shabanowitz J, Hunt DF, Jerez CA | Mol Cell Proteomics | 10.1074/mcp.M700042-MCP200 | 2007 | Acidithiobacillus/*chemistry, Bacterial Proteins/*chemistry, Chromatography, Liquid, Mass Spectrometry, Periplasm/*chemistry, *Proteomics | ||
| Metabolism | 17966524 | Penetration analysis of elements and bioleaching treatment of spent refractory for recycling. | Masafumi T, Masanori F | J Environ Sci (China) | 10.1016/s1001-0742(07)60187-9 | 2007 | Acidithiobacillus/*metabolism, *Conservation of Natural Resources, Environmental Pollutants/*metabolism, Mass Spectrometry, Species Specificity | Phylogeny |
| Metabolism | 17986795 | Increase in Fe2+-producing activity during growth of Acidithiobacillus ferrooxidans ATCC23270 on sulfur. | Sugio T, Taha TM, Kanao T, Takeuchi F | Biosci Biotechnol Biochem | 10.1271/bbb.70253 | 2007 | Acidithiobacillus/drug effects/enzymology/*growth & development, Culture Media/chemistry/metabolism/pharmacology, Electron Transport Complex IV/isolation & purification, Energy Metabolism, Ferric Compounds/metabolism/pharmacology, Iron/*metabolism, Oxidoreductases/analysis/*metabolism, Sulfur/analysis/*metabolism | Enzymology |
| Enzymology | 18058071 | Expression, purification and characterization of a high potential iron-sulfur protein from Acidithiobacillus ferrooxidans. | Zeng J, Jiang H, Liu Y, Liu J, Qiu G | Biotechnol Lett | 10.1007/s10529-007-9612-2 | 2007 | Acidithiobacillus/*chemistry/genetics, Amino Acid Sequence, Bacterial Proteins/*chemistry/*isolation & purification, Binding Sites, Chromatography, Affinity, Cloning, Molecular, Cysteine/chemistry, Electron Spin Resonance Spectroscopy, Escherichia coli/enzymology, Iron-Sulfur Proteins/*chemistry/*isolation & purification, Models, Molecular, Molecular Sequence Data, Molecular Weight, Mutagenesis, Site-Directed, Photosynthetic Reaction Center Complex Proteins/*chemistry/*isolation & purification, Plasmids, Recombinant Proteins/chemistry/isolation & purification, Sequence Alignment, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization | Phylogeny |
| Genetics | 18083856 | The genome sequence of the metal-mobilizing, extremely thermoacidophilic archaeon Metallosphaera sedula provides insights into bioleaching-associated metabolism. | Auernik KS, Maezato Y, Blum PH, Kelly RM | Appl Environ Microbiol | 10.1128/AEM.02019-07 | 2007 | Amino Acid Sequence, Archaeal Proteins/genetics/*metabolism, Gene Expression Regulation, Archaeal, *Genome, Archaeal, *Hot Temperature, Iron/*metabolism, Molecular Sequence Data, Oligonucleotide Array Sequence Analysis, Oxidation-Reduction, *Sequence Analysis, DNA, Sulfates/*metabolism, *Sulfolobaceae/classification/genetics/metabolism | Metabolism |
| Metabolism | 18203861 | The chemolithoautotroph Acidithiobacillus ferrooxidans can survive under phosphate-limiting conditions by expressing a C-P lyase operon that allows it to grow on phosphonates. | Vera M, Pagliai F, Guiliani N, Jerez CA | Appl Environ Microbiol | 10.1128/AEM.02101-07 | 2008 | Acidithiobacillus/*genetics/growth & development/metabolism, Gene Expression Regulation, Bacterial, Genes, Bacterial, Lyases/*genetics/metabolism, Microbial Viability/genetics, Models, Genetic, Oligonucleotide Array Sequence Analysis, *Operon, Organophosphonates/*metabolism, Phosphates/*metabolism, Regulon/genetics, Reverse Transcriptase Polymerase Chain Reaction | Transcriptome |
| Phylogeny | 18391470 | Isolation and characterization of Acidithiobacillus ferrooxidans strain D3-2 active in copper bioleaching from a copper mine in Chile. | Sugio T, Wakabayashi M, Kanao T, Takeuchi F | Biosci Biotechnol Biochem | 10.1271/bbb.70743 | 2008 | Acidithiobacillus/growth & development/*isolation & purification/*metabolism, Chile, Copper/chemistry/*isolation & purification/*metabolism, Culture Media/chemistry, Iron/metabolism, *Mining, Oxidation-Reduction, Solubility/drug effects, Sulfites/pharmacology | Metabolism |
| Phylogeny | 18534824 | ribB and ribBA genes from Acidithiobacillus ferrooxidans: expression levels under different growth conditions and phylogenetic analysis. | Knegt FH, Mello LV, Reis FC, Santos MT, Vicentini R, Ferraz LF, Ottoboni LM | Res Microbiol | 10.1016/j.resmic.2008.04.002 | 2008 | Acidithiobacillus/classification/*enzymology/genetics/*growth & development, Bacterial Proteins/chemistry/*genetics/metabolism, Base Sequence, GTP Cyclohydrolase/chemistry/*genetics/metabolism, *Gene Expression Regulation, Bacterial, Genome, Bacterial, Intramolecular Transferases/chemistry/*genetics/metabolism, Molecular Sequence Data, Nucleic Acid Conformation, Operon, *Phylogeny | Genetics |
| Metabolism | 18574631 | In vitro assembly of [Fe4S4] cluster in high potential iron-sulfur protein from Acidithiobacillus ferrooxidans. | Zeng J, Jiang H, Geng M, Wang Y, Zhang X, Liu J, Qiu G | Curr Microbiol | 10.1007/s00284-008-9170-4 | 2008 | Acidithiobacillus/*metabolism, Bacterial Proteins/*metabolism, Iron Compounds/chemistry/*metabolism, Iron-Sulfur Proteins/*metabolism, Photosynthetic Reaction Center Complex Proteins/*metabolism, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Spectrum Analysis, Sulfides/metabolism | |
| Metabolism | 18603796 | Reduction of Hg2+ with reduced mammalian cytochrome c by cytochrome c oxidase purified from a mercury-resistant acidithiobacillus ferrooxidans strain, MON-1. | Sugio T, Fujii M, Ninomiya Y, Kanao T, Negishi A, Takeuchi F | Biosci Biotechnol Biochem | 10.1271/bbb.80070 | 2008 | Acidithiobacillus/*enzymology, Animals, Cytochromes c/*metabolism, Dose-Response Relationship, Drug, Drug Resistance, Electron Transport Complex IV/*metabolism, Mercury/chemistry/*pharmacology, Oxidation-Reduction | Enzymology |
| 18609604 | Mechanism of microbial flotation using Thiobacillus ferrooxidans for pyrite suppression. | Ohmura N, Kitamura K, Saiki H | Biotechnol Bioeng | 10.1002/bit.260410611 | 1993 | |||
| Enzymology | 18791023 | Reconstitution of iron oxidase from sulfur-grown Acidithiobacillus ferrooxidans. | Taha TM, Kanao T, Takeuchi F, Sugio T | Appl Environ Microbiol | 10.1128/AEM.00787-08 | 2008 | Acidithiobacillus/*enzymology, Azurin/isolation & purification/metabolism, Cytochromes c/isolation & purification/metabolism, Electron Transport Complex IV/isolation & purification/metabolism, Iron/*metabolism, Oxidoreductases/*isolation & purification/*metabolism | Metabolism |
| Enzymology | 18955818 | Expression, purification, and characterization of iron-sulfur cluster assembly regulator IscR from Acidithiobacillus ferrooxidans. | Zeng J, Zhang K, Liu J, Qiu G | J Microbiol Biotechnol | 8097 | 2008 | Acidithiobacillus/*chemistry/genetics/metabolism, Amino Acid Sequence, Bacterial Proteins/*chemistry/genetics/*isolation & purification/metabolism, Cloning, Molecular, Escherichia coli/genetics/metabolism, *Gene Expression, Iron-Sulfur Proteins/*chemistry/genetics/*isolation & purification/metabolism, Mass Spectrometry, Molecular Sequence Data, Operon, Sequence Alignment | Metabolism |
| Metabolism | 19047816 | Regulation of CO2 fixation gene expression in Acidithiobacillus ferrooxidans ATCC 23270 by Lix984n shock. | Wang W, Xiao S, Chao J, Chen Q, Qiu G, Liu X | J Microbiol Biotechnol | 10.4014/jmb.0700.737 | 2008 | Acidithiobacillus/drug effects/genetics/growth & development/*metabolism, Amino Acid Sequence, Bacterial Proteins/chemistry/*genetics/metabolism, Biotechnology/methods, Carbon Dioxide/*metabolism, Electron Transport Complex IV/genetics, *Gene Expression Regulation, Bacterial, Molecular Sequence Data, Operon, Oximes/*pharmacology, Polymerase Chain Reaction/methods | Genetics |
| Genetics | 19077236 | Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications. | Valdes J, Pedroso I, Quatrini R, Dodson RJ, Tettelin H, Blake R 2nd, Eisen JA, Holmes DS | BMC Genomics | 10.1186/1471-2164-9-597 | 2008 | Acidithiobacillus/*genetics/*metabolism, Computational Biology, Genes, Bacterial, *Genome, Bacterial, Industrial Microbiology, Molecular Sequence Data, Multigene Family | Metabolism |
| Metabolism | 19085035 | Investigation of elemental sulfur speciation transformation mediated by Acidithiobacillus ferrooxidans. | He H, Zhang CG, Xia JL, Peng AA, Yang Y, Jiang HC, Zheng L, Ma CY, Zhao YD, Nie ZY, Qiu GZ | Curr Microbiol | 10.1007/s00284-008-9330-6 | 2008 | Absorptiometry, Photon, Acidithiobacillus/growth & development/*metabolism/ultrastructure, Biotransformation, Culture Media, Electron Probe Microanalysis/*methods, Microscopy, Electron, Scanning Transmission, Spectrometry, X-Ray Emission, Spectroscopy, Fourier Transform Infrared, Sulfides/metabolism, Sulfur/analysis/*metabolism | Cultivation |
| Genetics | 19090483 | A stoichiometric model of Acidithiobacillus ferrooxidans ATCC 23270 for metabolic flux analysis. | Hold C, Andrews BA, Asenjo JA | Biotechnol Bioeng | 10.1002/bit.22183 | 2009 | Acidithiobacillus/*genetics, Computer Simulation, *Genome, Bacterial, Metabolic Networks and Pathways/*genetics | |
| Metabolism | 19441229 | [Response of genes for synthesizing the magnetic of Acidithiobacillus ferrooxidans to different concentration of Fe2+ stress]. | Liu X, Wu H, Liu W, Li S | Sheng Wu Gong Cheng Xue Bao | 2009 | Acidithiobacillus/*genetics/metabolism, Amino Acid Sequence, Bacterial Proteins/genetics/*metabolism, Dose-Response Relationship, Drug, Ferrous Compounds/*pharmacology, Gene Expression Profiling, Genes, Bacterial, *Magnetics, Molecular Sequence Data, Stress, Physiological, Sulfur/metabolism | Genetics | |
| Genetics | 19445839 | Real-time PCR analysis of the heat-shock response of Acidithiobacillus ferrooxidans ATCC 23270. | Xiao S, Chao J, Wang W, Fang F, Qui G, Liu X | Folia Biol (Praha) | FB2009A0001 | 2009 | Acidithiobacillus/genetics/*physiology, Bacterial Proteins/genetics/physiology, Computational Biology, Gene Expression Regulation, Bacterial/genetics/*physiology, Genome, Bacterial/genetics, Heat-Shock Proteins/genetics/physiology, Hydrogen-Ion Concentration, Polymerase Chain Reaction/*methods, Promoter Regions, Genetic/genetics, Temperature | |
| Phylogeny | 19483787 | Comparative genomic analysis of Acidithiobacillus ferrooxidans strains using the A. ferrooxidans ATCC 23270 whole-genome oligonucleotide microarray. | Luo H, Shen L, Yin H, Li Q, Chen Q, Luo Y, Liao L, Qiu G, Liu X | Can J Microbiol | 10.1139/w08-158 | 2009 | Acidithiobacillus/*genetics, China, Cluster Analysis, Conserved Sequence, DNA, Bacterial/*genetics, *Genome, Bacterial, Geography, *Industrial Microbiology, Nucleic Acid Hybridization, Oligonucleotide Array Sequence Analysis/*methods, Open Reading Frames, Phylogeny, Polymorphism, Genetic, Sequence Homology, *Synteny | Genetics |
| Metabolism | 19502725 | Ferrous iron production mediated by tetrathionate hydrolase in tetrathionate-, sulfur-, and iron-grown Acidithiobacillus ferrooxidans ATCC 23270 cells. | Sugio T, Taha TM, Takeuchi F | Biosci Biotechnol Biochem | 10.1271/bbb.90036 | 2009 | Amino Acid Sequence, Culture Media, Electrophoresis, Polyacrylamide Gel, Ferrous Compounds/*metabolism, Hydrolases/*metabolism, Sulfur/*metabolism, Tetrathionic Acid/*metabolism, Thiobacillus/enzymology/growth & development/*metabolism | Enzymology |
| Enzymology | 19652354 | Preliminary X-ray crystallographic analysis of sulfide:quinone oxidoreductase from Acidithiobacillus ferrooxidans. | Zhang Y, Cherney MM, Solomonson M, Liu J, James MN, Weiner JH | Acta Crystallogr Sect F Struct Biol Cryst Commun | 10.1107/S1744309109027535 | 2009 | Amino Acid Sequence, Cloning, Molecular, Crystallography, X-Ray, Molecular Sequence Data, Protein Conformation, Quinone Reductases/*chemistry/genetics/isolation & purification, Recombinant Proteins/chemistry/genetics/isolation & purification, Sequence Homology, Amino Acid, Thiobacillus/*enzymology | Genetics |
| Metabolism | 19703284 | Extending the models for iron and sulfur oxidation in the extreme acidophile Acidithiobacillus ferrooxidans. | Quatrini R, Appia-Ayme C, Denis Y, Jedlicki E, Holmes DS, Bonnefoy V | BMC Genomics | 10.1186/1471-2164-10-394 | 2009 | Acidithiobacillus/*genetics/metabolism, Computational Biology, Gene Expression Profiling, Genes, Bacterial, *Genome, Bacterial, Iron/*metabolism, Metabolomics, Oligonucleotide Array Sequence Analysis, Oxidation-Reduction, RNA, Bacterial/genetics, Sulfur Compounds/*metabolism | Genetics |
| Metabolism | 19727950 | Cys92, Cys101, Cys197, and Cys203 are crucial residues for coordinating the iron-sulfur cluster of RhdA from Acidithiobacillus ferrooxidans. | Dai Y, Liu J, Zheng C, Wu A, Zeng J, Qiu G | Curr Microbiol | 10.1007/s00284-009-9476-x | 2009 | Acidithiobacillus/*chemistry/genetics/metabolism, Amino Acid Motifs, Amino Acid Sequence, Bacterial Proteins/*chemistry/genetics/metabolism, Binding Sites, Cloning, Molecular, Cysteine/*chemistry/genetics/metabolism, Iron/*metabolism, Molecular Sequence Data, Protein Binding, Sequence Alignment, Sulfur/*metabolism | Enzymology |
| Metabolism | 19806397 | Type IV pili of Acidithiobacillus ferrooxidans are necessary for sliding, twitching motility, and adherence. | Li YQ, Wan DS, Huang SS, Leng FF, Yan L, Ni YQ, Li HY | Curr Microbiol | 10.1007/s00284-009-9494-8 | 2009 | Acidithiobacillus/*physiology/ultrastructure, Bacterial Adhesion/*physiology, Fimbriae Proteins/genetics/metabolism, Fimbriae, Bacterial/*metabolism/ultrastructure, Flagella/*metabolism/ultrastructure, Gene Expression Regulation, Bacterial | |
| Enzymology | 20033172 | K30, H150, and H168 are essential residues for coordinating pyridoxal 5'-phosphate of O-acetylserine sulfhydrylase from Acidithiobacillus ferrooxidans. | Zheng C, Nie L, Qian L, Wang Z, Liu G, Liu J | Curr Microbiol | 10.1007/s00284-009-9565-x | 2009 | Acidithiobacillus/*enzymology/genetics/metabolism, Amino Acid Sequence, Catalytic Domain, Cloning, Molecular, Coenzymes/metabolism, Conserved Sequence, Cysteine Synthase/*chemistry/*genetics/isolation & purification/metabolism, Escherichia coli/genetics, Molecular Sequence Data, Protein Binding, Pyridoxal Phosphate/chemistry/metabolism, Recombinant Proteins/chemistry/genetics/isolation & purification/metabolism, Schiff Bases, Serine/analogs & derivatives/metabolism | Metabolism |
| Pathogenicity | 20630730 | Cytoplasmic membrane response to copper and nickel in Acidithiobacillus ferrooxidans. | Mykytczuk NC, Trevors JT, Ferroni GD, Leduc LG | Microbiol Res | 10.1016/j.micres.2010.03.004 | 2010 | Acidithiobacillus/chemistry/*drug effects/growth & development/metabolism, Adaptation, Physiological, Cell Membrane/*chemistry/drug effects, Copper/*pharmacology, Diphenylhexatriene/analysis/chemistry/pharmacology, Fatty Acids/analysis, Fluorescence Polarization, Membrane Fluidity/drug effects, Microbial Sensitivity Tests, Nickel/*pharmacology, Transition Temperature | Metabolism |
| Metabolism | 21071859 | Sulfite oxidation catalyzed by aa(3)-type cytochrome c oxidase in Acidithiobacillus ferrooxidans. | Sugio T, Ako A, Takeuchi F | Biosci Biotechnol Biochem | 10.1271/bbb.100446 | 2010 | Acidithiobacillus/enzymology/*metabolism, Bacterial Proteins/metabolism, Catalysis, Electron Transport Complex IV/*metabolism, Oxidation-Reduction, Sulfites/*metabolism | Enzymology |
| Pathogenicity | 21789491 | A genomic island provides Acidithiobacillus ferrooxidans ATCC 53993 additional copper resistance: a possible competitive advantage. | Orellana LH, Jerez CA | Appl Microbiol Biotechnol | 10.1007/s00253-011-3494-x | 2011 | Acidithiobacillus/*drug effects/*genetics/growth & development, Adenosine Triphosphatases/genetics/metabolism, Bacterial Load, Copper/*toxicity, *Drug Resistance, Bacterial, Escherichia coli/genetics, Gene Expression, Gene Expression Profiling, Gene Expression Regulation, Bacterial, Gene Expression Regulation, Enzymologic, Genes, Bacterial, *Genomic Islands, Real-Time Polymerase Chain Reaction | Metabolism |
| Metabolism | 21830017 | Genome wide identification of Acidithiobacillus ferrooxidans (ATCC 23270) transcription factors and comparative analysis of ArsR and MerR metal regulators. | Hodar C, Moreno P, di Genova A, Latorre M, Reyes-Jara A, Maass A, Gonzalez M, Cambiazo V | Biometals | 10.1007/s10534-011-9484-8 | 2011 | Acidithiobacillus/*genetics/*metabolism, Amino Acid Sequence, Bacterial Proteins/classification/genetics/*metabolism, Binding Sites, DNA-Binding Proteins/classification/genetics/*metabolism, *Gene Expression Regulation, Bacterial, Homeostasis, Metals/*metabolism, Molecular Sequence Data, Phylogeny, Sequence Alignment, Transcription Factors/classification/genetics/*metabolism | Phylogeny |
| 21833324 | Growth of Acidithiobacillus Ferrooxidans ATCC 23270 in Thiosulfate Under Oxygen-Limiting Conditions Generates Extracellular Sulfur Globules by Means of a Secreted Tetrathionate Hydrolase. | Beard S, Paradela A, Albar JP, Jerez CA | Front Microbiol | 10.3389/fmicb.2011.00079 | 2011 | |||
| Metabolism | 22098310 | The extremophile Acidithiobacillus ferrooxidans possesses a c-di-GMP signalling pathway that could play a significant role during bioleaching of minerals. | Ruiz LM, Castro M, Barriga A, Jerez CA, Guiliani N | Lett Appl Microbiol | 10.1111/j.1472-765X.2011.03180.x | 2011 | Acidithiobacillus/genetics/metabolism/*physiology, Bacterial Proteins/chemistry/genetics/metabolism, Biofilms, Cyclic GMP/*analogs & derivatives/chemistry/genetics/metabolism, Escherichia coli/genetics, Intracellular Space/metabolism, Minerals/*metabolism, Recombinant Proteins/chemistry/genetics/metabolism, *Signal Transduction, Tandem Mass Spectrometry | Proteome |
| Phylogeny | 22151959 | The small heat shock proteins from Acidithiobacillus ferrooxidans: gene expression, phylogenetic analysis, and structural modeling. | Ribeiro DA, Bem LE, Vicentini R, Ferraz LF, Murakami MT, Ottoboni LM | BMC Microbiol | 10.1186/1471-2180-11-259 | 2011 | Acidithiobacillus/*genetics/metabolism, Amino Acid Sequence, Bacterial Proteins/genetics/*metabolism, Base Sequence, Computational Biology, Gene Expression Regulation, Bacterial, Heat-Shock Proteins, Small/genetics/*metabolism, Hot Temperature, Models, Molecular, Molecular Sequence Data, *Phylogeny, Protein Structure, Tertiary, Sequence Analysis, Protein | Metabolism |
| Cultivation | 22210219 | Development of a markerless gene replacement system for Acidithiobacillus ferrooxidans and construction of a pfkB mutant. | Wang H, Liu X, Liu S, Yu Y, Lin J, Lin J, Pang X, Zhao J | Appl Environ Microbiol | 10.1128/AEM.07230-11 | 2011 | Acidithiobacillus/*genetics/growth & development, Culture Media/chemistry, Escherichia coli K12/genetics, Gene Deletion, Gene Expression, Gene Expression Profiling, Gene Knockout Techniques/*methods, Genetic Engineering/*methods, Genetics, Microbial/*methods, Glucose/metabolism, Molecular Biology/*methods, Phosphofructokinases/genetics, Polymerase Chain Reaction, Recombinant Proteins/biosynthesis/genetics, Recombination, Genetic | Metabolism |
| Metabolism | 22555344 | Transcriptional and functional studies of a Cd(II)/Pb(II)-responsive transcriptional regulator(CmtR) from Acidithiobacillus ferrooxidans ATCC 23270. | Zheng C, Li Y, Nie L, Qian L, Cai L, Liu J | Curr Microbiol | 10.1007/s00284-012-0117-4 | 2012 | Acidithiobacillus/*genetics/*metabolism, Amino Acid Sequence, Cadmium/*metabolism/toxicity, Chromatography, Affinity, Cloning, Molecular, Computational Biology, Drug Resistance, Bacterial, Escherichia coli/genetics, Gene Expression Profiling, Genes, Bacterial, Genome, Bacterial, Lead/*metabolism/toxicity, Models, Molecular, Molecular Sequence Data, Protein Binding, Real-Time Polymerase Chain Reaction, Recombinant Proteins/genetics/isolation & purification, Reverse Transcriptase Polymerase Chain Reaction, Sequence Alignment, Sequence Homology, Amino Acid, Transcription Factors/*genetics/*metabolism | Genetics |
| Metabolism | 22805785 | Cloning, expression, and functional analysis of molecular motor pilT and pilU genes of type IV pili in Acidithiobacillus ferrooxidans. | Li Y, Huang S, Zhang X, Huang T, Li H | Appl Microbiol Biotechnol | 10.1007/s00253-012-4271-1 | 2012 | Acidithiobacillus/*genetics/*metabolism, Adenosine Triphosphatases/chemistry/genetics/metabolism, Amino Acid Motifs, Binding Sites, Cloning, Molecular, DNA, Bacterial/chemistry/genetics, Fimbriae, Bacterial/*genetics/*metabolism, Gene Expression Profiling, Molecular Motor Proteins/chemistry/*genetics/*metabolism, Molecular Sequence Data, Molecular Weight, Sequence Analysis, DNA, Transcription, Genetic | Enzymology |
| Transcriptome | 22805826 | Global transcriptional analysis of stress-response strategies in Acidithiobacillus ferrooxidans ATCC 23270 exposed to organic extractant--Lix984n. | Zhou Z, Fang Y, Li Q, Yin H, Qin W, Liang Y, Li Q, Li N, Liu X, Qiu G, Liu X | World J Microbiol Biotechnol | 10.1007/s11274-011-0903-3 | 2011 | Acidithiobacillus/*drug effects/genetics/physiology, Electron Transport, *Gene Expression Regulation, Bacterial, Metabolic Networks and Pathways/genetics, Microarray Analysis, Oligonucleotide Array Sequence Analysis, Organic Chemicals/*toxicity, Solvents/toxicity, *Stress, Physiological, *Transcriptome | Stress |
| Enzymology | 23055613 | Cloning, expression and bioinformatics analysis of ATP sulfurylase from Acidithiobacillus ferrooxidans ATCC 23270 in Escherichia coli. | Jaramillo ML, Abanto M, Quispe RL, Calderon J, Del Valle LJ, Talledo M, Ramirez P | Bioinformation | 10.6026/97320630008695 | 2012 | ||
| Enzymology | 23064330 | Tetrathionate-forming thiosulfate dehydrogenase from the acidophilic, chemolithoautotrophic bacterium Acidithiobacillus ferrooxidans. | Kikumoto M, Nogami S, Kanao T, Takada J, Kamimura K | Appl Environ Microbiol | 10.1128/AEM.02251-12 | 2012 | Acidithiobacillus/*enzymology/*metabolism, Cloning, Molecular, Enzyme Stability, Escherichia coli/genetics, Ferrous Compounds/metabolism, Gene Expression, Heme/analysis, Hydrogen-Ion Concentration, Molecular Weight, Open Reading Frames, Oxidoreductases/chemistry/*genetics/isolation & purification/*metabolism, Recombinant Proteins/genetics/isolation & purification/metabolism, Spectrum Analysis, Sulfur/metabolism, Temperature, Tetrathionic Acid/*metabolism | Metabolism |
| Pathogenicity | 23319327 | Shotgun proteomics study of early biofilm formation process of Acidithiobacillus ferrooxidans ATCC 23270 on pyrite. | Vera M, Krok B, Bellenberg S, Sand W, Poetsch A | Proteomics | 10.1002/pmic.201200386 | 2013 | Acidithiobacillus/cytology/*drug effects/*physiology, Bacterial Proteins/metabolism, Biofilms/*drug effects/*growth & development, Iron/*pharmacology, Plankton/drug effects/metabolism/microbiology, Proteome/metabolism, Proteomics/*methods, Sulfides/*pharmacology | Metabolism |
| Phylogeny | 23344975 | Differential gene expression and bioinformatics analysis of copper resistance gene afe_1073 in Acidithiobacillus ferrooxidans. | Hu Q, Wu X, Jiang Y, Liu Y, Liang Y, Liu X, Yin H, Baba N | Biol Trace Elem Res | 10.1007/s12011-012-9589-0 | 2013 | Acidithiobacillus/classification/drug effects/*genetics, Bacterial Proteins/chemistry/*genetics/metabolism, Binding Sites/genetics, Computational Biology/*methods, Copper/metabolism/pharmacology, Dose-Response Relationship, Drug, Drug Resistance/*genetics, *Gene Expression Profiling, Gene Expression Regulation, Bacterial/drug effects, Homeostasis, Models, Molecular, Mutation, Protein Structure, Tertiary, Reverse Transcriptase Polymerase Chain Reaction, Species Specificity | Pathogenicity |
| Genetics | 23440740 | Type IV pili of Acidithiobacillus ferrooxidans can transfer electrons from extracellular electron donors. | Li Y, Li H | J Basic Microbiol | 10.1002/jobm.201200300 | 2013 | Acidithiobacillus/*physiology, Amino Acid Sequence, Bacterial Proteins/genetics/*metabolism, *Electrons, Ferrous Compounds/*chemistry, Fimbriae, Bacterial/*physiology, Molecular Sequence Data | Metabolism |
| Pathogenicity | 23486178 | ICE Afe 1, an actively excising genetic element from the biomining bacterium Acidithiobacillus ferrooxidans. | Bustamante P, Covarrubias PC, Levican G, Katz A, Tapia P, Holmes D, Quatrini R, Orellana O | J Mol Microbiol Biotechnol | 10.1159/000346669 | 2013 | Acidithiobacillus/drug effects/*genetics, Computational Biology, Gene Expression, *Gene Transfer, Horizontal, *Interspersed Repetitive Sequences, Mitomycin/metabolism, Recombination, Genetic, Transcriptional Activation/drug effects | Metabolism |
| Pathogenicity | 23487941 | [Effect of simulated heavy metal leaching solution of electroplating sludge on the bioactivity of Acidithiobacillus ferrooxidans]. | Xie XY, Sun PD, Lou JQ, Guo MX, Ma WG | Huan Jing Ke Xue | 2013 | Acidithiobacillus/*drug effects, Computer Simulation, *Electroplating, Industrial Waste/*analysis, Metals, Heavy/*isolation & purification/pharmacology, *Sewage/microbiology | Biotechnology | |
| Metabolism | 23974497 | Attachment of Acidithiobacillus ferrooxidans onto different solid substrates and fitting through Langmuir and Freundlich equations. | Xia LX, Shen Z, Vargas T, Sun WJ, Ruan RM, Xie ZD, Qiu GZ | Biotechnol Lett | 10.1007/s10529-013-1316-1 | 2013 | Acidithiobacillus/chemistry/cytology/*metabolism, Adsorption, Bacterial Adhesion/*physiology, Copper/*metabolism, Extracellular Space/chemistry/metabolism, Kinetics, Linear Models, *Models, Theoretical, Polysaccharides, Bacterial/chemistry/metabolism, Quartz/*metabolism, Sulfur/*metabolism | Enzymology |
| Metabolism | 24380576 | New copper resistance determinants in the extremophile acidithiobacillus ferrooxidans: a quantitative proteomic analysis. | Almarcegui RJ, Navarro CA, Paradela A, Albar JP, von Bernath D, Jerez CA | J Proteome Res | 10.1021/pr4009833 | 2014 | Acidithiobacillus/*drug effects/metabolism, Bacterial Proteins/*metabolism, Copper/*pharmacology, Drug Resistance, Microbial, Electrophoresis, Gel, Two-Dimensional, *Proteome, Real-Time Polymerase Chain Reaction, Spectrometry, Mass, Electrospray Ionization | Enzymology |
| Pathogenicity | 24510139 | Heavy metal resistance strategies of acidophilic bacteria and their acquisition: importance for biomining and bioremediation. | Navarro CA, von Bernath D, Jerez CA | Biol Res | 10.4067/S0716-97602013000400008 | 2013 | Acidithiobacillus/*drug effects/genetics, Adaptation, Physiological, Betaproteobacteria/*drug effects/genetics, *Biodegradation, Environmental, *Gene Expression Regulation, Bacterial, Genomic Islands, Homeostasis, Metals, Heavy/*pharmacology | |
| Enzymology | 24893664 | Identification and characterization of an ETHE1-like sulfur dioxygenase in extremely acidophilic Acidithiobacillus spp. | Wang H, Liu S, Liu X, Li X, Wen Q, Lin J | Appl Microbiol Biotechnol | 10.1007/s00253-014-5830-4 | 2014 | Acidithiobacillus/*enzymology/genetics, Dioxygenases/chemistry/genetics/isolation & purification/*metabolism, Energy Metabolism, Enzyme Inhibitors/metabolism, Enzyme Stability, Gene Expression, Gene Knockout Techniques, Hydrogen-Ion Concentration, Molecular Sequence Data, Recombinant Proteins/chemistry/genetics/isolation & purification/metabolism, Sequence Analysis, DNA, Sulfur/metabolism, Temperature | Metabolism |
| Metabolism | 25041950 | Response to copper of Acidithiobacillus ferrooxidans ATCC 23270 grown in elemental sulfur. | Almarcegui RJ, Navarro CA, Paradela A, Albar JP, von Bernath D, Jerez CA | Res Microbiol | 10.1016/j.resmic.2014.07.005 | 2014 | Acidithiobacillus/*chemistry/*drug effects/growth & development/metabolism, Bacterial Proteins/*analysis, Copper/*metabolism, Gene Expression Profiling, Proteome/*analysis, Stress, Physiological, Sulfur/*metabolism | Pathogenicity |
| Pathogenicity | 25384039 | Toxin-antitoxin systems in the mobile genome of Acidithiobacillus ferrooxidans. | Bustamante P, Tello M, Orellana O | PLoS One | 10.1371/journal.pone.0112226 | 2014 | Acidithiobacillus/*genetics, Antitoxins/*genetics, Chromosomes, Bacterial/genetics, Databases, Genetic, Genome, Bacterial/*genetics, *Interspersed Repetitive Sequences, Plasmids/genetics, Ribonucleases/genetics, Toxins, Biological/*genetics | Genetics |
| Metabolism | 26637599 | Cytoplasmic CopZ-Like Protein and Periplasmic Rusticyanin and AcoP Proteins as Possible Copper Resistance Determinants in Acidithiobacillus ferrooxidans ATCC 23270. | Navarro CA, von Bernath D, Martinez-Bussenius C, Castillo RA, Jerez CA | Appl Environ Microbiol | 10.1128/AEM.02810-15 | 2015 | Acidithiobacillus/*drug effects/*metabolism, Bacterial Proteins/genetics/*metabolism, Binding Sites, Copper/*metabolism/*toxicity, *Drug Resistance, Bacterial, Escherichia coli/drug effects/genetics/metabolism, Mutagenesis, Site-Directed, Protein Binding, Recombinant Proteins/genetics/metabolism | Pathogenicity |
| Metabolism | 26645388 | Evidence of cell surface iron speciation of acidophilic iron-oxidizing microorganisms in indirect bioleaching process. | Nie ZY, Liu HC, Xia JL, Yang Y, Zhen XJ, Zhang LJ, Qiu GZ | Biometals | 10.1007/s10534-015-9893-1 | 2015 | Acidianus/*metabolism, Acidithiobacillus/*metabolism, Copper/metabolism, *Energy Metabolism, Ferrous Compounds/metabolism, Iron/*metabolism, Sulfides/metabolism, Surface Properties, X-Ray Absorption Spectroscopy | Biotechnology |
| Genetics | 26710853 | A Comprehensive tRNA Genomic Survey Unravels the Evolutionary History of tRNA Arrays in Prokaryotes. | Tran TT, Belahbib H, Bonnefoy V, Talla E | Genome Biol Evol | 10.1093/gbe/evv254 | 2015 | Acidithiobacillus/*genetics, *Evolution, Molecular, Genetic Speciation, *Genome, Bacterial, Genomic Instability, RNA, Transfer/*genetics | |
| Phylogeny | 27356527 | Missing Iron-Oxidizing Acidophiles Highly Sensitive to Organic Compounds. | Ueoka N, Kouzuma A, Watanabe K | Microbes Environ | 10.1264/jsme2.ME16086 | 2016 | Acidithiobacillus/genetics/*growth & development/isolation & purification/*metabolism, Cluster Analysis, Culture Media/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Enzymes/genetics, Genome, Bacterial, Iron/*metabolism, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Enzymology |
| Metabolism | 27519020 | Insights into the fluoride-resistant regulation mechanism of Acidithiobacillus ferrooxidans ATCC 23270 based on whole genome microarrays. | Ma L, Li Q, Shen L, Feng X, Xiao Y, Tao J, Liang Y, Yin H, Liu X | J Ind Microbiol Biotechnol | 10.1007/s10295-016-1827-6 | 2016 | Acidithiobacillus/*drug effects/genetics/metabolism, Energy Metabolism/genetics, Ferrous Compounds/metabolism, Fluorides/*toxicity, Gene Expression Profiling, Genomics, Oligonucleotide Array Sequence Analysis, Oxidation-Reduction, Sulfur/metabolism | Genetics |
| 27683573 | Insights into the Quorum Sensing Regulon of the Acidophilic Acidithiobacillus ferrooxidans Revealed by Transcriptomic in the Presence of an Acyl Homoserine Lactone Superagonist Analog. | Mamani S, Moinier D, Denis Y, Soulere L, Queneau Y, Talla E, Bonnefoy V, Guiliani N | Front Microbiol | 10.3389/fmicb.2016.01365 | 2016 | |||
| Phylogeny | 28708455 | Functionality of tRNAs encoded in a mobile genetic element from an acidophilic bacterium. | Alamos P, Tello M, Bustamante P, Gutierrez F, Shmaryahu A, Maldonado J, Levican G, Orellana O | RNA Biol | 10.1080/15476286.2017.1349049 | 2017 | Acidithiobacillus/classification/*genetics/metabolism, Aminoacylation, Conjugation, Genetic, *Gene Transfer, Horizontal, *Genes, Bacterial, *Genome, Bacterial, *Interspersed Repetitive Sequences, Mutation, Nucleic Acid Conformation, Phylogeny, Protein Biosynthesis, RNA, Transfer/*genetics/metabolism | Metabolism |
| Metabolism | 29464360 | Identification and Analysis of a Novel Gene Cluster Involves in Fe(2+) Oxidation in Acidithiobacillus ferrooxidans ATCC 23270, a Typical Biomining Acidophile. | Ai C, Liang Y, Miao B, Chen M, Zeng W, Qiu G | Curr Microbiol | 10.1007/s00284-018-1453-9 | 2018 | Acidithiobacillus/genetics/*metabolism, Amino Acid Sequence, Bacterial Proteins/*genetics/metabolism, Cytochromes c/metabolism, Ferrous Compounds/*metabolism, Gene Expression Regulation, Bacterial, Molecular Sequence Data, *Multigene Family, Operon, Oxidation-Reduction, Phylogeny, Sequence Alignment, Sulfur/metabolism | Genetics |
| Metabolism | 29468116 | Acidithiobacillus ferrooxidans's comprehensive model driven analysis of the electron transfer metabolism and synthetic strain design for biomining applications. | Campodonico MA, Vaisman D, Castro JF, Razmilic V, Mercado F, Andrews BA, Feist AM, Asenjo JA | Metab Eng Commun | 10.1016/j.meteno.2016.03.003 | 2016 | ||
| 29996532 | Possible Role of Envelope Components in the Extreme Copper Resistance of the Biomining Acidithiobacillus ferrooxidans. | Oetiker N, Norambuena R, Martinez-Bussenius C, Navarro CA, Amaya F, Alvarez SA, Paradela A, Jerez CA | Genes (Basel) | 10.3390/genes9070347 | 2018 | |||
| 30804894 | The Type IV Secretion System of ICEAfe1: Formation of a Conjugative Pilus in Acidithiobacillus ferrooxidans. | Flores-Rios R, Moya-Beltran A, Pareja-Barrueto C, Arenas-Salinas M, Valenzuela S, Orellana O, Quatrini R | Front Microbiol | 10.3389/fmicb.2019.00030 | 2019 | |||
| Stress | 30984136 | Proteomics Reveal Enhanced Oxidative Stress Responses and Metabolic Adaptation in Acidithiobacillus ferrooxidans Biofilm Cells on Pyrite. | Bellenberg S, Huynh D, Poetsch A, Sand W, Vera M | Front Microbiol | 10.3389/fmicb.2019.00592 | 2019 | ||
| Metabolism | 31941390 | In silico genome analysis of an acid mine drainage species, Acidiphilium multivorum, for potential commercial acetic acid production and biomining. | Micciche AC, Barabote RD, Dittoe DK, Ricke SC | J Environ Sci Health B | 10.1080/03601234.2019.1710985 | 2020 | Acetic Acid/*metabolism, Acidiphilium/*genetics/metabolism, Arsenate Reductases/genetics, Computational Biology, Computer Simulation, Genome Size, *Genome, Bacterial, Metabolic Networks and Pathways/genetics, Metals/metabolism, Mining, Oxidoreductases/genetics, Plasmids, Sulfur/metabolism | Genetics |
| Metabolism | 32032883 | Arsenic(III) biotransformation to tooeleite associated with the oxidation of Fe(II) via Acidithiobacillus ferrooxidans. | Wang X, Li Q, Liao Q, Yan Y, Xia J, Lin Q, Wang Q, Liang Y | Chemosphere | 10.1016/j.chemosphere.2020.126080 | 2020 | Acidithiobacillus/genetics/*metabolism, Arsenic/*analysis, Arsenites/*analysis/metabolism, Biotransformation, Crystallization, Ferrous Compounds/*analysis/metabolism, Gene Expression/drug effects, Iron/*analysis, Minerals/metabolism, Models, Theoretical, Oxidation-Reduction, Spectroscopy, Fourier Transform Infrared | Pathogenicity |
| Metabolism | 32448917 | Early reprecipitation of sulfate salts in coal biodesulfurization processes using acidophilic chemolithotrophic bacteria. | Duarte Briceno PG, Caicedo Pineda GA, Marquez Godoy MA | World J Microbiol Biotechnol | 10.1007/s11274-020-02855-w | 2020 | Acidithiobacillus/*growth & development/metabolism, Biodegradation, Environmental, *Chemoautotrophic Growth, Coal/*microbiology, Culture Media/*chemistry, Iron/metabolism, Sulfates/metabolism, Sulfides/metabolism, Sulfur Compounds/*metabolism | Cultivation |
| Biotechnology | 32569817 | High copper concentration reduces biofilm formation in Acidithiobacillus ferrooxidans by decreasing production of extracellular polymeric substances and its adherence to elemental sulfur. | Vargas-Straube MJ, Beard S, Norambuena R, Paradela A, Vera M, Jerez CA | J Proteomics | 10.1016/j.jprot.2020.103874 | 2020 | Acidithiobacillus, Bacterial Proteins, Biofilms, *Copper, *Extracellular Polymeric Substance Matrix, Sulfur | |
| Metabolism | 33046243 | A regulation mechanism for the promoter region of the pet II operon in Acidithiobacillus ferrooxidans ATCC23270. | Zhang L, Wang T, Yang Y, Yang JM | Biochem Biophys Res Commun | 10.1016/j.bbrc.2020.09.088 | 2020 | Acidithiobacillus/*genetics/*metabolism, Bacterial Proteins/*genetics/*metabolism, Escherichia coli/metabolism, Gene Expression Regulation, Bacterial, Genetic Vectors, Green Fluorescent Proteins/metabolism, Operon, Promoter Regions, Genetic/*drug effects, Thiosulfates/pharmacology | Pathogenicity |
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