Strain identifier

BacDive ID: 11772

Type strain: Yes

Species: Paradesulfitobacterium aromaticivorans

Strain Designation: UKTL

Strain history: R. U. Meckenstock strain UKTL.

NCBI tax ID(s): 872276 (species)

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General

@ref: 8140

BacDive-ID: 11772

DSM-Number: 19510

keywords: 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Paradesulfitobacterium aromaticivorans UKTL is an anaerobe, spore-forming, mesophilic bacterium that was isolated from soil of a former coal gasification site.

NCBI tax id

  • NCBI tax id: 872276
  • Matching level: species

strain history

@refhistory
8140<- U. Kunapuli, GSF-Natl. Research Center for Environment and Health, Neuherberg, Germany; UKTL
67770R. U. Meckenstock strain UKTL.

doi: 10.13145/bacdive11772.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Desulfitobacteriaceae
  • genus: Paradesulfitobacterium
  • species: Paradesulfitobacterium aromaticivorans
  • full scientific name: Paradesulfitobacterium aromaticivorans (Kunapuli et al. 2010) Li et al. 2021

  • synonyms

    • @ref: 20215
    • synonym: Desulfitobacterium aromaticivorans

@ref: 8140

domain: Bacteria

phylum: Bacillota

class: Clostridia

order: Eubacteriales

family: Desulfitobacteriaceae

genus: Paradesulfitobacterium

species: Paradesulfitobacterium aromaticivorans

full scientific name: Paradesulfitobacterium aromaticivorans

strain designation: UKTL

type strain: yes

Morphology

cell morphology

  • @ref: 29004
  • gram stain: positive
  • cell length: 3.15 µm
  • cell width: 0.5 µm
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

  • @ref: 8140
  • name: DESULFITOBACTERIUM AROMATICIVORANS MEDIUM (DSMZ Medium 1243)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1243
  • composition: Name: PARADESULFITOBACTERIUM MEDIUM (DSMZ Medium 1243) Composition: Fe(III) citrate 13.5509 g/l Na-pyruvate 2.4728 g/l NaHCO3 2.4728 g/l KCl 0.49456 g/l MgCl2 x 6 H2O 0.395648 g/l NH4Cl 0.24728 g/l KH2PO4 0.197824 g/l Na2S x 9 H2O 0.098912 g/l MgSO4 x 7 H2O 0.0296736 g/l Nitrilotriacetic acid 0.0148368 g/l NaCl 0.0098912 g/l MnSO4 x H2O 0.0049456 g/l ZnSO4 x 7 H2O 0.00178042 g/l CoSO4 x 7 H2O 0.00178042 g/l FeSO4 x 7 H2O 0.00098912 g/l CaCl2 x 2 H2O 0.00098912 g/l NiCl2 x 6 H2O 0.000296736 g/l AlK(SO4)2 x 12 H2O 0.000197824 g/l Pyridoxine hydrochloride 9.8912e-05 g/l CuSO4 x 5 H2O 9.8912e-05 g/l H3BO3 9.8912e-05 g/l Na2MoO4 x 2 H2O 9.8912e-05 g/l (DL)-alpha-Lipoic acid 4.9456e-05 g/l p-Aminobenzoic acid 4.9456e-05 g/l Calcium D-(+)-pantothenate 4.9456e-05 g/l Nicotinic acid 4.9456e-05 g/l Thiamine HCl 4.9456e-05 g/l Riboflavin 4.9456e-05 g/l Biotin 1.97824e-05 g/l Folic acid 1.97824e-05 g/l Na2WO4 x 2 H2O 3.95648e-06 g/l Na2SeO3 x 5 H2O 2.96736e-06 g/l Vitamin B12 9.8912e-07 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8140positivegrowth30mesophilic
29004positiveoptimum30mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepH
29004positivegrowth6.5-7.5
29004positiveoptimum6.8

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
8140anaerobe
29004anaerobe

spore formation

  • @ref: 29004
  • spore formation: yes

observation

  • @ref: 67770
  • observation: quinones: MK-7

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
8140soil of a former coal gasification siteGliwicePolandPOLEurope
67770Soil of a former coal-gasification site in GliwicePolandPOLEurope

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_25944.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_99;96_12975;97_15753;98_19495;99_25944&stattab=map
  • Last taxonomy: Desulfitobacterium aromaticivorans subclade
  • 16S sequence: EU711071
  • Sequence Identity:
  • Total samples: 65
  • soil counts: 14
  • aquatic counts: 43
  • animal counts: 6
  • plant counts: 2

Safety information

risk assessment

  • @ref: 8140
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8140
  • description: Desulfitobacterium aromaticivorans UKTL 16S ribosomal RNA gene, partial sequence
  • accession: EU711071
  • length: 1408
  • database: ena
  • NCBI tax ID: 536049

GC content

@refGC-contentmethod
814047.7high performance liquid chromatography (HPLC)
2900447.7

External links

@ref: 8140

culture collection no.: DSM 19510, JCM 15765

straininfo link

  • @ref: 80990
  • straininfo: 406643

literature

  • topic: Phylogeny
  • Pubmed-ID: 19656942
  • title: Desulfitobacterium aromaticivorans sp. nov. and Geobacter toluenoxydans sp. nov., iron-reducing bacteria capable of anaerobic degradation of monoaromatic hydrocarbons.
  • authors: Kunapuli U, Jahn MK, Lueders T, Geyer R, Heipieper HJ, Meckenstock RU
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.003525-0
  • year: 2009
  • mesh: Betaproteobacteria/*classification/genetics/*isolation & purification/metabolism, Cellulose/*metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
8140Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19510)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19510
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29004Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2543728776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80990Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID406643.1StrainInfo: A central database for resolving microbial strain identifiers