Strain identifier
BacDive ID: 11771
Type strain:
Species: Desulfitobacterium metallireducens
Strain Designation: 853-15A
Strain history: <- K. T. Finneran, University of Massachusetts, Department of Microbiology, USA; 853-15A <- K. T. Finneran {2000}
NCBI tax ID(s): 871968 (strain), 142877 (species)
General
@ref: 5829
BacDive-ID: 11771
DSM-Number: 15288
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, motile
description: Desulfitobacterium metallireducens 853-15A is an anaerobe, spore-forming, mesophilic bacterium that was isolated from aquifer sediment .
NCBI tax id
NCBI tax id | Matching level |
---|---|
142877 | species |
871968 | strain |
strain history
- @ref: 5829
- history: <- K. T. Finneran, University of Massachusetts, Department of Microbiology, USA; 853-15A <- K. T. Finneran {2000}
doi: 10.13145/bacdive11771.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Desulfitobacteriaceae
- genus: Desulfitobacterium
- species: Desulfitobacterium metallireducens
- full scientific name: Desulfitobacterium metallireducens Finneran et al. 2002
@ref: 5829
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Peptococcaceae
genus: Desulfitobacterium
species: Desulfitobacterium metallireducens
full scientific name: Desulfitobacterium metallireducens Finneran et al. 2002
strain designation: 853-15A
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 97.055 | |
69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 5829
- name: GEOANAEROBACTER MEDIUM (DSMZ Medium 838)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium838.pdf
culture temp
- @ref: 5829
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance | confidence |
---|---|---|
5829 | anaerobe | |
69480 | anaerobe | 99.998 |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 5829
- sample type: aquifer sediment (uranium-contaminated)
- geographic location: New Mexico, San Juan River flood plain, Shiprock
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Groundwater |
#Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_5749.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_99;96_2759;97_3395;98_4282;99_5749&stattab=map
- Last taxonomy: Desulfitobacterium metallireducens subclade
- 16S sequence: AF297871
- Sequence Identity:
- Total samples: 693
- soil counts: 412
- aquatic counts: 99
- animal counts: 85
- plant counts: 97
Safety information
risk assessment
- @ref: 5829
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5829
- description: Desulfitobacterium metallireducens DSM 15288 16S ribosomal RNA gene, partial sequence
- accession: AF297871
- length: 1514
- database: ena
- NCBI tax ID: 871968
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Desulfitobacterium metallireducens DSM 15288 | GCA_000231405 | contig | ncbi | 871968 |
66792 | Desulfitobacterium metallireducens DSM 15288 | 871968.4 | wgs | patric | 871968 |
66792 | Desulfitobacterium metallireducens 853-15A, DSM 15288 | 2507149024 | complete | img | 871968 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | yes | 85.503 | no |
flagellated | no | 79.518 | no |
gram-positive | no | 70.169 | no |
anaerobic | yes | 98.771 | yes |
halophile | no | 98.535 | no |
spore-forming | yes | 95.938 | no |
thermophile | no | 87.235 | yes |
glucose-util | yes | 70.464 | no |
aerobic | no | 96.019 | no |
glucose-ferment | no | 75.615 | no |
External links
@ref: 5829
culture collection no.: DSM 15288, ATCC BAA 636
straininfo link
- @ref: 80989
- straininfo: 100624
literature
- topic: Phylogeny
- Pubmed-ID: 12508850
- title: Desulfitobacterium metallireducens sp. nov., an anaerobic bacterium that couples growth to the reduction of metals and humic acids as well as chlorinated compounds.
- authors: Finneran KT, Forbush HM, VanPraagh CV, Lovley DR
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/00207713-52-6-1929
- year: 2002
- mesh: Anaerobiosis, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Ecosystem, Electron Transport, Geologic Sediments/microbiology, Humic Substances/metabolism, Metals/metabolism, Microscopy, Electron, Molecular Sequence Data, Oxidation-Reduction, Peptococcaceae/*classification/genetics/growth & development/metabolism, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species Specificity
- topic2: Metabolism
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
5829 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15288) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15288 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
80989 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID100624.1 | StrainInfo: A central database for resolving microbial strain identifiers |