Strain identifier

BacDive ID: 11771

Type strain: Yes

Species: Desulfitobacterium metallireducens

Strain Designation: 853-15A

Strain history: <- K. T. Finneran, University of Massachusetts, Department of Microbiology, USA; 853-15A <- K. T. Finneran {2000}

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General

@ref: 5829

BacDive-ID: 11771

DSM-Number: 15288

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, motile

description: Desulfitobacterium metallireducens 853-15A is an anaerobe, spore-forming, mesophilic bacterium that was isolated from aquifer sediment .

NCBI tax id

NCBI tax idMatching level
142877species
871968strain

strain history

  • @ref: 5829
  • history: <- K. T. Finneran, University of Massachusetts, Department of Microbiology, USA; 853-15A <- K. T. Finneran {2000}

doi: 10.13145/bacdive11771.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Desulfitobacteriaceae
  • genus: Desulfitobacterium
  • species: Desulfitobacterium metallireducens
  • full scientific name: Desulfitobacterium metallireducens Finneran et al. 2002

@ref: 5829

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Peptococcaceae

genus: Desulfitobacterium

species: Desulfitobacterium metallireducens

full scientific name: Desulfitobacterium metallireducens Finneran et al. 2002

strain designation: 853-15A

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes97.055
69480100positive

Culture and growth conditions

culture medium

  • @ref: 5829
  • name: GEOANAEROBACTER MEDIUM (DSMZ Medium 838)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium838.pdf

culture temp

  • @ref: 5829
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
5829anaerobe
69480anaerobe99.998

spore formation

@refspore formationconfidence
69481yes100
69480yes100

Isolation, sampling and environmental information

isolation

  • @ref: 5829
  • sample type: aquifer sediment (uranium-contaminated)
  • geographic location: New Mexico, San Juan River flood plain, Shiprock
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Groundwater
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_5749.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_99;96_2759;97_3395;98_4282;99_5749&stattab=map
  • Last taxonomy: Desulfitobacterium metallireducens subclade
  • 16S sequence: AF297871
  • Sequence Identity:
  • Total samples: 693
  • soil counts: 412
  • aquatic counts: 99
  • animal counts: 85
  • plant counts: 97

Safety information

risk assessment

  • @ref: 5829
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 5829
  • description: Desulfitobacterium metallireducens DSM 15288 16S ribosomal RNA gene, partial sequence
  • accession: AF297871
  • length: 1514
  • database: ena
  • NCBI tax ID: 871968

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Desulfitobacterium metallireducens DSM 15288GCA_000231405contigncbi871968
66792Desulfitobacterium metallireducens DSM 15288871968.4wgspatric871968
66792Desulfitobacterium metallireducens 853-15A, DSM 152882507149024completeimg871968

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileyes85.503no
flagellatedno79.518no
gram-positiveno70.169no
anaerobicyes98.771yes
halophileno98.535no
spore-formingyes95.938no
thermophileno87.235yes
glucose-utilyes70.464no
aerobicno96.019no
glucose-fermentno75.615no

External links

@ref: 5829

culture collection no.: DSM 15288, ATCC BAA 636

straininfo link

  • @ref: 80989
  • straininfo: 100624

literature

  • topic: Phylogeny
  • Pubmed-ID: 12508850
  • title: Desulfitobacterium metallireducens sp. nov., an anaerobic bacterium that couples growth to the reduction of metals and humic acids as well as chlorinated compounds.
  • authors: Finneran KT, Forbush HM, VanPraagh CV, Lovley DR
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-52-6-1929
  • year: 2002
  • mesh: Anaerobiosis, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Ecosystem, Electron Transport, Geologic Sediments/microbiology, Humic Substances/metabolism, Metals/metabolism, Microscopy, Electron, Molecular Sequence Data, Oxidation-Reduction, Peptococcaceae/*classification/genetics/growth & development/metabolism, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species Specificity
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5829Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15288)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15288
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
80989Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID100624.1StrainInfo: A central database for resolving microbial strain identifiers