Strain identifier

BacDive ID: 11747

Type strain: Yes

Species: Bibersteinia trehalosi

Strain Designation: A92, S110, serovar 3/T15, CNP 908

Strain history: CIP <- 1993, F. Escande, Inst. Pasteur, Paris, France: strain CNP 908 <- 1993, W. Mannheim, Inst. Med. Mikrobiol., Marburg, Germany: strain HIM 808-2 <- NCTC, Pasteurella haemolytica <- J.G. Brotherston: strain S 110, "Pasteurella trehalosi"

NCBI tax ID(s): 47735 (species)

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General

@ref: 16699

BacDive-ID: 11747

DSM-Number: 23101

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, animal pathogen

description: Bibersteinia trehalosi A92 is a microaerophile, mesophilic animal pathogen that was isolated from ovine septicaemia.

NCBI tax id

  • NCBI tax id: 47735
  • Matching level: species

strain history

@refhistory
16699<- CCUG <- NCTC <- J. G. Brotherston; S110
123577CIP <- 1993, F. Escande, Inst. Pasteur, Paris, France: strain CNP 908 <- 1993, W. Mannheim, Inst. Med. Mikrobiol., Marburg, Germany: strain HIM 808-2 <- NCTC, Pasteurella haemolytica <- J.G. Brotherston: strain S 110, "Pasteurella trehalosi"

doi: 10.13145/bacdive11747.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Bibersteinia
  • species: Bibersteinia trehalosi
  • full scientific name: Bibersteinia trehalosi (Sneath and Stevens 1990) Blackall et al. 2007

  • synonyms

    • @ref: 20215
    • synonym: Pasteurella trehalosi

@ref: 16699

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Bibersteinia

species: Bibersteinia trehalosi

full scientific name: Bibersteinia trehalosi (Sneath and Stevens 1990) Blackall et al. 2007

strain designation: A92, S110, serovar 3/T15, CNP 908

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16699COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
16699BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
40804MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicolayesDistilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g)
123577CIP Medium 118-byeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=118-b

culture temp

@refgrowthtypetemperaturerange
16699positivegrowth37mesophilic
40804positivegrowth37mesophilic
48678positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
16699microaerophile
48678microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837718257ornithine-degradation
6837727897tryptophan-energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377proline-arylamidase+3.4.11.5
68377ornithine decarboxylase-4.1.1.17

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
16699+/-+-+--+/-+-++--
16699-+/-+-+--+/-+-++-

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling date
16699ovine septicaemiaUnited KingdomGBREurope
48678Lamb,septicaemia1958
123577Animal, Lamb, septicemia

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Host#Mammals#Caprinae (Sheep/Goat)

taxonmaps

  • @ref: 69479
  • File name: preview.99_3920.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18;96_1273;97_1510;98_1838;99_3920&stattab=map
  • Last taxonomy: Bibersteinia trehalosi subclade
  • 16S sequence: AY362927
  • Sequence Identity:
  • Total samples: 6175
  • soil counts: 67
  • aquatic counts: 177
  • animal counts: 5902
  • plant counts: 29

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
16699yes2Risk group (German classification)
1235772Risk group (French classification)

Sequence information

16S sequences

  • @ref: 16699
  • description: Bibersteinia trehalosi strain NCTC 10370 16S ribosomal RNA gene, partial sequence
  • accession: AY362927
  • length: 1362
  • database: ena
  • NCBI tax ID: 47735

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bibersteinia trehalosi DSM 23101GCA_004346205scaffoldncbi47735
66792Bibersteinia trehalosi strain DSM 2310147735.17wgspatric47735
66792Bibersteinia trehalosi DSM 231012784746803draftimg47735

GC content

  • @ref: 16699
  • GC-content: 42.6

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno91.71no
flagellatedno96.214no
gram-positiveno98.344no
anaerobicno97.817no
aerobicno90.248no
halophileno66.217no
spore-formingno98.364no
glucose-utilno65.389no
thermophileno97.308yes
glucose-fermentno61.411no

External links

@ref: 16699

culture collection no.: DSM 23101, ATCC 29703, CCUG 27190, CIP 103829, NCTC 10370, CCM 4733, HIM 808-2

straininfo link

  • @ref: 80965
  • straininfo: 44847

literature

  • topic: Phylogeny
  • Pubmed-ID: 17392184
  • title: Reclassification of [Pasteurella] trehalosi as Bibersteinia trehalosi gen. nov., comb. nov.
  • authors: Blackall PJ, Bojesen AM, Christensen H, Bisgaard M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.64521-0
  • year: 2007
  • mesh: Animals, Cattle/microbiology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Deer/microbiology, Goats/microbiology, Molecular Sequence Data, Pasteurella/*classification/genetics/isolation & purification, Pasteurellaceae/*classification/genetics/isolation & purification, Phylogeny, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Sheep/microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
16699Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23101)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23101
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
40804Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15670
48678Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 27190)https://www.ccug.se/strain?id=27190
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68377Automatically annotated from API NH
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80965Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID44847.1StrainInfo: A central database for resolving microbial strain identifiers
123577Curators of the CIPCollection of Institut Pasteur (CIP 103829)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103829