Strain identifier

BacDive ID: 11744

Type strain: Yes

Species: Pasteurella caballi

Strain Designation: 83851, NVSL-GB83851, CNP 925

Strain history: CIP <- 1993, F. Escande, Inst. Pasteur, Paris, France: strain CNP 925 <- 1993, ATCC <- L.K. Schlater: strain NVSL-GB83851

NCBI tax ID(s): 243701 (species)

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General

@ref: 16568

BacDive-ID: 11744

DSM-Number: 22973

keywords: 16S sequence, Bacteria, microaerophile, mesophilic

description: Pasteurella caballi 83851 is a microaerophile, mesophilic bacterium that was isolated from uterus of a mare .

NCBI tax id

  • NCBI tax id: 243701
  • Matching level: species

strain history

@refhistory
16568<- CCUG <- L. K. Schlater; strain 83851
117084CIP <- 1993, F. Escande, Inst. Pasteur, Paris, France: strain CNP 925 <- 1993, ATCC <- L.K. Schlater: strain NVSL-GB83851

doi: 10.13145/bacdive11744.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Pasteurella
  • species: Pasteurella caballi
  • full scientific name: Pasteurella caballi Schlater et al. 1990

@ref: 16568

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Pasteurella

species: Pasteurella caballi

full scientific name: Pasteurella caballi Schlater et al. 1990

strain designation: 83851, NVSL-GB83851, CNP 925

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16568COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
40868MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicolayesDistilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g)
117084CIP Medium 118-byeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=118-b

culture temp

@refgrowthtypetemperaturerange
16568positivegrowth37mesophilic
40868positivegrowth37mesophilic
49412positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 49412
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
6837717634D-glucose+builds acid from
6837715824D-fructose+builds acid from
6837717306maltose+builds acid from
6837717992sucrose+builds acid from
6837716199urea-hydrolysis
6837727897tryptophan-energy source
6838129016arginine-hydrolysis
6838116988D-ribose+builds acid from
6838116899D-mannitol+builds acid from
6838130911sorbitol-builds acid from
6838117716lactose+builds acid from
6838127082trehalose-builds acid from
6838116634raffinose+builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
6836935581indoleno
6838115688acetoinno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6838115688acetoin-
6837735581indole-
6836935581indole-

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase+
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase+3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381alkaline phosphatase+3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6
68377tryptophan deaminase-4.1.99.1
68377alkaline phosphatase+3.1.3.1
68377urease-3.5.1.5
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
49412+------+-------------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
16568+++++--++-+--
16568-+++++--++-+-

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
16568--+--+++-+-++-----+--+---+------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
16568uterus of a mare (adult female)WashingtonUSAUSANorth America
49412Equine uterus,adult femaleWashingtonUSAUSANorth America
117084Mare, uterusPullman, WashingtonUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Equidae (Horse)
#Host Body-Site#Urogenital tract

taxonmaps

  • @ref: 69479
  • File name: preview.99_49576.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18;96_22381;97_27969;98_35636;99_49576&stattab=map
  • Last taxonomy: Pasteurella caballi subclade
  • 16S sequence: AY362918
  • Sequence Identity:
  • Total samples: 926
  • soil counts: 26
  • aquatic counts: 17
  • animal counts: 882
  • plant counts: 1

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
165682Risk group (German classification)
1170842Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Pasteurella caballi 16S ribosomal RNA gene, partial sequenceAY634654489ena243701
16568Pasteurella caballi strain ATCC 49197 16S ribosomal RNA gene, partial sequenceAY3629181362ena243701

GC content

  • @ref: 16568
  • GC-content: 42.0

External links

@ref: 16568

culture collection no.: DSM 22973, ATCC 49197, CCUG 28833, CIP 103915, CCUG 83851

straininfo link

  • @ref: 80962
  • straininfo: 42348

literature

  • topic: Phylogeny
  • Pubmed-ID: 2584369
  • title: Pasteurella caballi, a new species from equine clinical specimens.
  • authors: Schlater LK, Brenner DJ, Steigerwalt AG, Moss CW, Lambert MA, Packer RA
  • journal: J Clin Microbiol
  • DOI: 10.1128/jcm.27.10.2169-2174.1989
  • year: 1989
  • mesh: Animals, Base Composition, DNA/analysis/genetics, Fatty Acids/analysis, Female, Horses/*microbiology, Male, Nucleic Acid Hybridization, Pasteurella/classification/genetics/*isolation & purification, Phenotype, Sequence Homology, Nucleic Acid
  • topic2: Phenotype

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16568Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22973)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22973
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40868Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15765
49412Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 28833)https://www.ccug.se/strain?id=28833
68369Automatically annotated from API 20NE
68377Automatically annotated from API NH
68381Automatically annotated from API rID32STR
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80962Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42348.1StrainInfo: A central database for resolving microbial strain identifiers
117084Curators of the CIPCollection of Institut Pasteur (CIP 103915)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103915