Strain identifier
BacDive ID: 11740
Type strain: 
Species: Pasteurella stomatis
Strain Designation: 166
Strain history: CIP <- 1986, NCTC <- R. Mutters, Phillipps Univ., Germany <- J.E. Smith: strain 166
NCBI tax ID(s): 760 (species)
version 9.2 (current version)
General
@ref: 16700
BacDive-ID: 11740
DSM-Number: 23102
keywords: 16S sequence, Bacteria, mesophilic
description: Pasteurella stomatis 166 is a mesophilic bacterium that was isolated from dog.
NCBI tax id
- NCBI tax id: 760
- Matching level: species
strain history
| @ref | history |
|---|---|
| 16700 | <- CCUG <- CIP <- NCTC <- J. E. Smith; 166 |
| 123323 | CIP <- 1986, NCTC <- R. Mutters, Phillipps Univ., Germany <- J.E. Smith: strain 166 |
doi: 10.13145/bacdive11740.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Pasteurella
- species: Pasteurella stomatis
- full scientific name: Pasteurella stomatis Mutters et al. 1985
@ref: 16700
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Pasteurella
species: Pasteurella stomatis
full scientific name: Pasteurella stomatis Mutters et al. 1985
strain designation: 166
type strain: yes
Morphology
colony morphology
- @ref: 16700
- type of hemolysis: gamma
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 16700 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
| 40446 | MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicola | yes | Distilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g) | |
| 123323 | CIP Medium 118-b | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=118-b |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 16700 | positive | growth | 37 |
| 40446 | positive | growth | 37 |
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68377 | 16199 | urea | - | hydrolysis |
| 68377 | 18257 | ornithine | - | degradation |
| 68377 | 17634 | D-glucose | + | builds acid from |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 16700 | catalase | + | 1.11.1.6 |
| 16700 | cytochrome-c oxidase | + | 1.9.3.1 |
| 68377 | beta-galactosidase | - | 3.2.1.23 |
| 68377 | urease | - | 3.5.1.5 |
| 68377 | ornithine decarboxylase | - | 4.1.1.17 |
| 68377 | beta-lactamase | + | 3.5.2.6 |
API NH
| @ref | PEN | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16700 | + | + | - | + | - | - | - | + | - | - | + | - | + |
| 16700 | + | + | + | - | + | - | - | - | + | - | - | + | - |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 16700 | dog | United Kingdom | GBR | Europe |
| 123323 | Animal, Dog, throat | United Kingdom | GBR | Europe |
isolation source categories
- Cat1: #Host
- Cat2: #Mammals
- Cat3: #Canidae (Dog)
Safety information
risk assessment
| @ref | biosafety level | biosafety level comment |
|---|---|---|
| 16700 | 2 | Risk group (German classification) |
| 123323 | 2 | Risk group (French classification) |
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Pasteurella stomatis strain ATCC 43327 16S ribosomal RNA gene, partial sequence | M75050 | 1479 | nuccore | 760 |
| 16700 | Pasteurella stomatis strain CCUG 17979 16S ribosomal RNA gene, partial sequence | AY362925 | 1364 | nuccore | 760 |
GC content
- @ref: 16700
- GC-content: 40.4-43.5
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 16700
culture collection no.: DSM 23102, ATCC 43327, CCUG 17979, CCUG 48849, CIP 102680, NCTC 11623
straininfo link
- @ref: 80958
- straininfo: 41775
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 16700 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23102) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23102 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 40446 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/14393 | ||||
| 68377 | Automatically annotated from API NH | |||||
| 80958 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID41775.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 123323 | Curators of the CIP | Collection of Institut Pasteur (CIP 102680) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102680 |