Strain identifier

BacDive ID: 11737

Type strain: Yes

Species: Pasteurella multocida subsp. gallicida

Strain Designation: IV-739, 739

Strain history: CIP <- 1989, NCTC <- 1960, R.S. Roberts, Runcorn, Cheshire, UK: strain 739

NCBI tax ID(s): 123812 (subspecies)

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General

@ref: 16718

BacDive-ID: 11737

DSM-Number: 23120

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative

description: Pasteurella multocida subsp. gallicida IV-739 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from bovine.

NCBI tax id

  • NCBI tax id: 123812
  • Matching level: subspecies

strain history

@refhistory
16718<- CCUG <- CCM <- M. Bisgaard, Langa, Denmark <- R. S. Roberts; IV-739
121181CIP <- 1989, NCTC <- 1960, R.S. Roberts, Runcorn, Cheshire, UK: strain 739

doi: 10.13145/bacdive11737.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Pasteurella
  • species: Pasteurella multocida subsp. gallicida
  • full scientific name: Pasteurella multocida subsp. gallicida Mutters et al. 1985

@ref: 16718

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Pasteurella

species: Pasteurella multocida subsp. gallicida

full scientific name: Pasteurella multocida subsp. gallicida Mutters et al. 1985

strain designation: IV-739, 739

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.981

colony morphology

  • @ref: 16718
  • type of hemolysis: gamma

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16718COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
40588MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicolayesDistilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g)
121181CIP Medium 118-byeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=118-b

culture temp

@refgrowthtypetemperaturerange
16718positivegrowth37mesophilic
40588positivegrowth37mesophilic
46726positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 46726
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no96
69480no99.991

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717634D-glucose+builds acid from
6837717992sucrose+builds acid from
6837716199urea-hydrolysis
6837727897tryptophan+energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
16718catalase+1.11.1.6
16718cytochrome-c oxidase+1.9.3.1
68377tryptophan deaminase+4.1.99.1
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68377urease-3.5.1.5
68377beta-lactamase+3.5.2.6

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
16718++-++--+---++
16718+++-++--+---+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
16718bovineUnited KingdomGBREurope
46726BovineUnited KingdomGBREurope
121181Animal, BovineUnited KingdomGBREurope

isolation source categories

  • Cat1: #Host
  • Cat2: #Mammals
  • Cat3: #Bovinae (Cow, Cattle)

taxonmaps

  • @ref: 69479
  • File name: preview.99_446.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18;96_298;97_330;98_371;99_446&stattab=map
  • Last taxonomy: Pasteurella multocida subclade
  • 16S sequence: AY078998
  • Sequence Identity:
  • Total samples: 28944
  • soil counts: 516
  • aquatic counts: 911
  • animal counts: 27398
  • plant counts: 119

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
167182Risk group (German classification)
1211812Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Pasteurella multocida subsp. gallicida strain NCTC 10204 16S ribosomal RNA gene, partial sequenceAY0789981468ena123812
16718Pasteurella multocida subsp. gallicida 16S ribosomal RNA gene, partial sequenceAF2944121363ena123812

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pasteurella multocida subsp. gallicida NCTC10204GCA_900636625completencbi123812
66792Pasteurella multocida ATCC 51689GCA_900115485scaffoldncbi747
66792Pasteurella multocida strain ATCC 51689747.327wgspatric747
66792Pasteurella multocida subsp. gallicida strain NCTC10204123812.3completepatric123812
66792Pasteurella multocida ATCC 516892684623041draftimg747

GC content

  • @ref: 16718
  • GC-content: 41.2
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno96no
flagellatedno95.421no
gram-positiveno98.014no
anaerobicno98.094no
aerobicno82.555yes
halophileyes50.739no
spore-formingno98.669no
thermophileno98.43yes
glucose-utilno62.487no
motileno86.139no
glucose-fermentyes50.833no

External links

@ref: 16718

culture collection no.: DSM 23120, ATCC 51689, CCM 4730, CCUG 17978, CIP 103285, NCTC 10204

straininfo link

  • @ref: 80956
  • straininfo: 43125

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16718Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23120)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23120
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40588Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15065
46726Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 17978)https://www.ccug.se/strain?id=17978
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68377Automatically annotated from API NH
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
80956Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID43125.1StrainInfo: A central database for resolving microbial strain identifiers
121181Curators of the CIPCollection of Institut Pasteur (CIP 103285)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103285