Strain identifier

BacDive ID: 11736

Type strain: Yes

Species: Pasteurella langaaensis

Strain Designation: F73

Strain history: CIP <- 1986, NCTC, Pasteurella langaa <- 1981, M. Bisgaard, Copenhagen, Denmark: strain F 73, Taxon 4

NCBI tax ID(s): 1122935 (strain), 756 (species)

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General

@ref: 16644

BacDive-ID: 11736

DSM-Number: 22999

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Pasteurella langaaensis F73 is a mesophilic bacterium that was isolated from respiratory tract .

NCBI tax id

NCBI tax idMatching level
756species
1122935strain

strain history

@refhistory
16644<- CCUG <- M. Bisgaard, Langaa, Denmark; F73
120554CIP <- 1986, NCTC, Pasteurella langaa <- 1981, M. Bisgaard, Copenhagen, Denmark: strain F 73, Taxon 4

doi: 10.13145/bacdive11736.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Pasteurella
  • species: Pasteurella langaaensis
  • full scientific name: Pasteurella langaaensis corrig. Mutters et al. 1985

  • synonyms

    • @ref: 20215
    • synonym: Pasteurella langaa

@ref: 16644

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Pasteurella

species: Pasteurella langaaensis

full scientific name: Pasteurella langaaensis Mutters et al. 1985

strain designation: F73

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no92.007
6948099.889negative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16644BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
16644COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
35424MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicolayesDistilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g)
120554CIP Medium 118-byeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=118-b

culture temp

@refgrowthtypetemperaturerange
16644positivegrowth37mesophilic
35424positivegrowth37mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.999

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717634D-glucose+builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source
6838129016arginine-hydrolysis
6838116988D-ribose+builds acid from
6838116899D-mannitol+builds acid from
6838130911sorbitol-builds acid from
6838117716lactose+builds acid from
6838127082trehalose-builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose-builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
6838115688acetoinno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6838115688acetoin-
6837735581indole-

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase+
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase+3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381alkaline phosphatase+3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6
68377tryptophan deaminase-4.1.99.1
68377alkaline phosphatase+3.1.3.1
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
16644+++/-+---++-+--
16644++++---++-+--
16644-++++---++-+-
16644-+++/-+---++-+-

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
16644--+--+++-+-+/-+-----+--+----------
16644--+--+++-+-++-----+--+----------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dateisolation date
16644respiratory tract (chicken)DenmarkDNKEurope
46282Chicken,respiratory tractDenmarkDNKEurope1981
120554Animal, Chicken, respiratory tractDenmarkDNKEurope1981

isolation source categories

Cat1Cat2Cat3
#Host#Birds#Chicken
#Host Body-Site#Oral cavity and airways#Airways

taxonmaps

  • @ref: 69479
  • File name: preview.99_149147.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18;96_50185;97_64608;98_86197;99_149147&stattab=map
  • Last taxonomy: Pasteurella langaaensis subclade
  • 16S sequence: AY362922
  • Sequence Identity:
  • Total samples: 1227
  • soil counts: 6
  • aquatic counts: 18
  • animal counts: 1189
  • plant counts: 14

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
166441Risk group (German classification)
1205542Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Pasteurella langaaensis strain ATCC 43328 16S ribosomal RNA gene, partial sequenceM750531477ena756
16644Pasteurella langaaensis strain CCUG 15566 16S ribosomal RNA gene, partial sequenceAY3629221363ena756

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pasteurella langaaensis DSM 22999GCA_003096995contigncbi1122935
66792Pasteurella langaaensis DSM 229991122935.3wgspatric1122935
66792Pasteurella langaaensis DSM 229992756170165draftimg1122935

GC content

  • @ref: 16644
  • GC-content: 43.9

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno91.761no
flagellatedno96.578no
gram-positiveno97.985no
anaerobicno96.269no
aerobicno95.731no
halophileyes62.417no
spore-formingno98.899no
glucose-utilno54.64no
glucose-fermentyes52.833no
thermophileno98.392yes

External links

@ref: 16644

culture collection no.: DSM 22999, ATCC 43328, CCUG 15566, CIP 102678, NCTC 11411

straininfo link

  • @ref: 80955
  • straininfo: 45126

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16644Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22999)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22999
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
35424Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14391
46282Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 15566)https://www.ccug.se/strain?id=15566
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68377Automatically annotated from API NH
68381Automatically annotated from API rID32STR
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
80955Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45126.1StrainInfo: A central database for resolving microbial strain identifiers
120554Curators of the CIPCollection of Institut Pasteur (CIP 102678)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102678