Strain identifier
BacDive ID: 11730
Type strain:
Species: Pasteurella canis
Strain Designation: 182
Strain history: CIP <- 1989, NCTC <- R. Mutters, Phillipps Univ., Marburg, Germany <- W. Frederiksen, Stat. Ser., Copenhagen, Denmark, biotype 6 or "dog-type" <- J.E. Smith: strain 182
NCBI tax ID(s): 753 (species)
General
@ref: 16564
BacDive-ID: 11730
DSM-Number: 22968
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic
description: Pasteurella canis 182 is a microaerophile, mesophilic bacterium that was isolated from healthy dog throat.
NCBI tax id
- NCBI tax id: 753
- Matching level: species
strain history
@ref | history |
---|---|
16564 | <- CCUG <- W. Frederiksen, Statens Serum Inst., Copenhagen, Denmark <- J. E. Smith, London, UK; 182 |
117141 | CIP <- 1989, NCTC <- R. Mutters, Phillipps Univ., Marburg, Germany <- W. Frederiksen, Stat. Ser., Copenhagen, Denmark, biotype 6 or "dog-type" <- J.E. Smith: strain 182 |
doi: 10.13145/bacdive11730.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Pasteurella
- species: Pasteurella canis
- full scientific name: Pasteurella canis Mutters et al. 1985
@ref: 16564
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Pasteurella
species: Pasteurella canis
full scientific name: Pasteurella canis Mutters et al. 1985
strain designation: 182
type strain: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
16564 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
16564 | BHI MEDIUM (DSMZ Medium 215) | yes | https://mediadive.dsmz.de/medium/215 | Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water |
40590 | MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicola | yes | Distilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g) | |
117141 | CIP Medium 118-b | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=118-b |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
16564 | positive | growth | 37 | mesophilic |
40590 | positive | growth | 37 | mesophilic |
45691 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 45691
- oxygen tolerance: microaerophile
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68374 | 18257 | ornithine | - | degradation |
68374 | 29016 | arginine | - | hydrolysis |
68374 | 25094 | lysine | - | degradation |
68374 | 16199 | urea | - | hydrolysis |
68374 | 18403 | L-arabitol | - | builds acid from |
68374 | 18024 | D-galacturonic acid | - | builds acid from |
68374 | Potassium 5-ketogluconate | - | builds acid from | |
68374 | 16899 | D-mannitol | - | builds acid from |
68374 | 17306 | maltose | - | builds acid from |
68374 | 15963 | ribitol | - | builds acid from |
68374 | 18394 | palatinose | - | builds acid from |
68374 | 15792 | malonate | - | assimilation |
68374 | 27897 | tryptophan | + | energy source |
68374 | 17634 | D-glucose | - | builds acid from |
68374 | 17992 | sucrose | - | builds acid from |
68374 | 30849 | L-arabinose | - | builds acid from |
68374 | 18333 | D-arabitol | - | builds acid from |
68374 | 27082 | trehalose | - | builds acid from |
68374 | 62345 | L-rhamnose | - | builds acid from |
68374 | 17268 | myo-inositol | - | builds acid from |
68374 | 17057 | cellobiose | - | builds acid from |
68374 | 30911 | sorbitol | - | builds acid from |
68377 | 17634 | D-glucose | + | builds acid from |
68377 | 17992 | sucrose | + | builds acid from |
68377 | 16199 | urea | - | hydrolysis |
68377 | 27897 | tryptophan | - | energy source |
68381 | 29016 | arginine | - | hydrolysis |
68381 | 16988 | D-ribose | + | builds acid from |
68381 | 16899 | D-mannitol | - | builds acid from |
68381 | 30911 | sorbitol | - | builds acid from |
68381 | 17716 | lactose | - | builds acid from |
68381 | 27082 | trehalose | - | builds acid from |
68381 | 16634 | raffinose | - | builds acid from |
68381 | 17992 | sucrose | + | builds acid from |
68381 | 30849 | L-arabinose | - | builds acid from |
68381 | 18333 | D-arabitol | - | builds acid from |
68381 | 40585 | alpha-cyclodextrin | - | builds acid from |
68381 | 606565 | hippurate | - | hydrolysis |
68381 | 28087 | glycogen | - | builds acid from |
68381 | 27941 | pullulan | - | builds acid from |
68381 | 17306 | maltose | - | builds acid from |
68381 | 28053 | melibiose | - | builds acid from |
68381 | 6731 | melezitose | - | builds acid from |
68381 | 320055 | methyl beta-D-glucopyranoside | - | builds acid from |
68381 | 16443 | D-tagatose | - | builds acid from |
68381 | 16199 | urea | - | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68377 | 35581 | indole | no |
68374 | 35581 | indole | yes |
68381 | 15688 | acetoin | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68381 | 15688 | acetoin | - | |
68377 | 35581 | indole | - | |
68374 | 35581 | indole | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68381 | urease | - | 3.5.1.5 |
68381 | beta-mannosidase | - | 3.2.1.25 |
68381 | glycyl tryptophan arylamidase | - | |
68381 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68381 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68381 | beta-galactosidase | - | 3.2.1.23 |
68381 | Alanyl-Phenylalanyl-Proline arylamidase | - | |
68381 | alkaline phosphatase | + | 3.1.3.1 |
68381 | alpha-galactosidase | - | 3.2.1.22 |
68381 | beta-glucuronidase | - | 3.2.1.31 |
68381 | beta-glucosidase | - | 3.2.1.21 |
68381 | arginine dihydrolase | - | 3.5.3.6 |
68377 | tryptophan deaminase | - | 4.1.99.1 |
68377 | gamma-glutamyltransferase | - | 2.3.2.2 |
68377 | proline-arylamidase | - | 3.4.11.5 |
68377 | beta-galactosidase | - | 3.2.1.23 |
68377 | urease | - | 3.5.1.5 |
68374 | L-aspartate arylamidase | - | 3.4.11.21 |
68374 | alpha-maltosidase | - | |
68374 | alpha-galactosidase | - | 3.2.1.22 |
68374 | alpha-glucosidase | - | 3.2.1.20 |
68374 | beta-galactosidase | - | 3.2.1.23 |
68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68374 | beta-glucuronidase | - | 3.2.1.31 |
68374 | beta-glucosidase | - | 3.2.1.21 |
68374 | lipase | - | |
68374 | urease | - | 3.5.1.5 |
68374 | lysine decarboxylase | - | 4.1.1.18 |
68374 | arginine dihydrolase | - | 3.5.3.6 |
68374 | ornithine decarboxylase | - | 4.1.1.17 |
API ID32E
@ref | ODC | ADH Arg | LDC Lys | URE | LARL | GAT | 5KG | LIP | RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | beta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alphaMAL | AspA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
45691 | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API NH
@ref | PEN | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
16564 | + | + | - | + | + | - | - | + | - | - | - | - | - |
16564 | - | + | + | - | + | + | - | - | + | - | - | - | - |
API rID32STR
@ref | ADH Arg | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | CDEX | VP | APPA | beta GAL | PyrA | beta NAG | GTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Mbeta DG | TAG | beta MAN | URE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
16564 | - | - | - | - | - | + | + | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
16564 | healthy dog throat | United Kingdom | GBR | Europe |
45691 | Healthy dog throat | |||
117141 | Animal, Dog, throat | United Kingdom | GBR | Europe |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Mammals | #Canidae (Dog) |
#Host Body-Site | #Oral cavity and airways | #Throat |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
16564 | 2 | Risk group (German classification) |
117141 | 2 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Pasteurella canis strain ATCC 43326 16S ribosomal RNA gene, partial sequence | M75049 | 1482 | ena | 753 |
16564 | Pasteurella canis strain CCUG 12400 16S ribosomal RNA gene, partial sequence | AY362919 | 1364 | ena | 753 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Pasteurella canis NCTC11621 | GCA_900454865 | contig | ncbi | 753 |
66792 | Pasteurella canis strain NCTC11621 | 753.5 | wgs | patric | 753 |
66792 | Pasteurella canis NCTC 11621 | 2871322674 | draft | img | 753 |
GC content
- @ref: 16564
- GC-content: 37.8
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 88.742 | no |
flagellated | no | 95.719 | no |
gram-positive | no | 98.638 | no |
anaerobic | no | 97.454 | no |
aerobic | no | 88.786 | yes |
halophile | no | 53.524 | no |
spore-forming | no | 98.631 | no |
glucose-util | no | 62.7 | no |
thermophile | no | 98.365 | yes |
glucose-ferment | no | 57.593 | no |
External links
@ref: 16564
culture collection no.: DSM 22968, ATCC 43326, CCUG 12400, CIP 103294, NCTC 11621, Smith 182
straininfo link
- @ref: 80949
- straininfo: 46344
literature
- topic: Genetics
- Pubmed-ID: 35638811
- title: Draft Genome Sequence of Blood-Origin Pasteurella canis Strain PA42, Isolated from a Dog in Japan.
- authors: Maeda T, Yoshida H, Kim JM, Tsuyuki Y, Kurita G, Kim JS, Takahashi T
- journal: Microbiol Resour Announc
- DOI: 10.1128/mra.00260-22
- year: 2022
- topic2: Phylogeny
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
16564 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22968) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22968 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
40590 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/15075 | ||||
45691 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 12400) | https://www.ccug.se/strain?id=12400 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68374 | Automatically annotated from API ID32E | |||||
68377 | Automatically annotated from API NH | |||||
68381 | Automatically annotated from API rID32STR | |||||
80949 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID46344.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
117141 | Curators of the CIP | Collection of Institut Pasteur (CIP 103294) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103294 |