Strain identifier

BacDive ID: 11730

Type strain: Yes

Species: Pasteurella canis

Strain Designation: 182

Strain history: CIP <- 1989, NCTC <- R. Mutters, Phillipps Univ., Marburg, Germany <- W. Frederiksen, Stat. Ser., Copenhagen, Denmark, biotype 6 or "dog-type" <- J.E. Smith: strain 182

NCBI tax ID(s): 753 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 16564

BacDive-ID: 11730

DSM-Number: 22968

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Pasteurella canis 182 is a microaerophile, mesophilic bacterium that was isolated from healthy dog throat.

NCBI tax id

  • NCBI tax id: 753
  • Matching level: species

strain history

@refhistory
16564<- CCUG <- W. Frederiksen, Statens Serum Inst., Copenhagen, Denmark <- J. E. Smith, London, UK; 182
117141CIP <- 1989, NCTC <- R. Mutters, Phillipps Univ., Marburg, Germany <- W. Frederiksen, Stat. Ser., Copenhagen, Denmark, biotype 6 or "dog-type" <- J.E. Smith: strain 182

doi: 10.13145/bacdive11730.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Pasteurella
  • species: Pasteurella canis
  • full scientific name: Pasteurella canis Mutters et al. 1985

@ref: 16564

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Pasteurella

species: Pasteurella canis

full scientific name: Pasteurella canis Mutters et al. 1985

strain designation: 182

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16564COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
16564BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
40590MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicolayesDistilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g)
117141CIP Medium 118-byeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=118-b

culture temp

@refgrowthtypetemperaturerange
16564positivegrowth37mesophilic
40590positivegrowth37mesophilic
45691positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 45691
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837418257ornithine-degradation
6837429016arginine-hydrolysis
6837425094lysine-degradation
6837416199urea-hydrolysis
6837418403L-arabitol-builds acid from
6837418024D-galacturonic acid-builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837416899D-mannitol-builds acid from
6837417306maltose-builds acid from
6837415963ribitol-builds acid from
6837418394palatinose-builds acid from
6837415792malonate-assimilation
6837427897tryptophan+energy source
6837417634D-glucose-builds acid from
6837417992sucrose-builds acid from
6837430849L-arabinose-builds acid from
6837418333D-arabitol-builds acid from
6837427082trehalose-builds acid from
6837462345L-rhamnose-builds acid from
6837417268myo-inositol-builds acid from
6837417057cellobiose-builds acid from
6837430911sorbitol-builds acid from
6837717634D-glucose+builds acid from
6837717992sucrose+builds acid from
6837716199urea-hydrolysis
6837727897tryptophan-energy source
6838129016arginine-hydrolysis
6838116988D-ribose+builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose-builds acid from
6838127082trehalose-builds acid from
6838116634raffinose-builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose-builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
6837435581indoleyes
6838115688acetoinno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6838115688acetoin-
6837735581indole-
6837435581indole+

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381alkaline phosphatase+3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68377urease-3.5.1.5
68374L-aspartate arylamidase-3.4.11.21
68374alpha-maltosidase-
68374alpha-galactosidase-3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase-3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase-3.2.1.21
68374lipase-
68374urease-3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase-3.5.3.6
68374ornithine decarboxylase-4.1.1.17

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
45691--------+-------+---------------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
16564++-++--+-----
16564-++-++--+----

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
16564-----++-----+-------------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
16564healthy dog throatUnited KingdomGBREurope
45691Healthy dog throat
117141Animal, Dog, throatUnited KingdomGBREurope

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Canidae (Dog)
#Host Body-Site#Oral cavity and airways#Throat

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
165642Risk group (German classification)
1171412Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Pasteurella canis strain ATCC 43326 16S ribosomal RNA gene, partial sequenceM750491482ena753
16564Pasteurella canis strain CCUG 12400 16S ribosomal RNA gene, partial sequenceAY3629191364ena753

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pasteurella canis NCTC11621GCA_900454865contigncbi753
66792Pasteurella canis strain NCTC11621753.5wgspatric753
66792Pasteurella canis NCTC 116212871322674draftimg753

GC content

  • @ref: 16564
  • GC-content: 37.8

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno88.742no
flagellatedno95.719no
gram-positiveno98.638no
anaerobicno97.454no
aerobicno88.786yes
halophileno53.524no
spore-formingno98.631no
glucose-utilno62.7no
thermophileno98.365yes
glucose-fermentno57.593no

External links

@ref: 16564

culture collection no.: DSM 22968, ATCC 43326, CCUG 12400, CIP 103294, NCTC 11621, Smith 182

straininfo link

  • @ref: 80949
  • straininfo: 46344

literature

  • topic: Genetics
  • Pubmed-ID: 35638811
  • title: Draft Genome Sequence of Blood-Origin Pasteurella canis Strain PA42, Isolated from a Dog in Japan.
  • authors: Maeda T, Yoshida H, Kim JM, Tsuyuki Y, Kurita G, Kim JS, Takahashi T
  • journal: Microbiol Resour Announc
  • DOI: 10.1128/mra.00260-22
  • year: 2022
  • topic2: Phylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16564Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22968)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22968
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40590Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15075
45691Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 12400)https://www.ccug.se/strain?id=12400
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68374Automatically annotated from API ID32E
68377Automatically annotated from API NH
68381Automatically annotated from API rID32STR
80949Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID46344.1StrainInfo: A central database for resolving microbial strain identifiers
117141Curators of the CIPCollection of Institut Pasteur (CIP 103294)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103294