Strain identifier

BacDive ID: 11722

Type strain: Yes

Species: Mannheimia granulomatis

Strain Designation: 26

Strain history: CIP <- 1990, ATCC <- G.R. Carter: strain 26, Pasteurella haemolytica-like

NCBI tax ID(s): 1122190 (strain), 85402 (species)

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General

@ref: 7943

BacDive-ID: 11722

DSM-Number: 19156

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped, animal pathogen

description: Mannheimia granulomatis 26 is a mesophilic, Gram-negative, rod-shaped animal pathogen that was isolated from cattle, subcutaneous granuloma.

NCBI tax id

NCBI tax idMatching level
85402species
1122190strain

strain history

@refhistory
7943<- CIP <- ATCC <- G. R. Carter; 26
119729CIP <- 1990, ATCC <- G.R. Carter: strain 26, Pasteurella haemolytica-like

doi: 10.13145/bacdive11722.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Mannheimia
  • species: Mannheimia granulomatis
  • full scientific name: Mannheimia granulomatis (Ribeiro et al. 1990) Angen et al. 1999

  • synonyms

    • @ref: 20215
    • synonym: Pasteurella granulomatis

@ref: 7943

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Mannheimia

species: Mannheimia granulomatis

full scientific name: Mannheimia granulomatis (Ribeiro et al. 1990) Angen et al. 1999

strain designation: 26

type strain: yes

Morphology

cell morphology

  • @ref: 119729
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 7943
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7943COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
7943BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
36558MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicolayesDistilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g)
119729CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
119729CIP Medium 118-byeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=118-b

culture temp

@refgrowthtypetemperaturerange
7943positivegrowth37mesophilic
36558positivegrowth37mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717634D-glucose+builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase-3.4.11.5
68377alkaline phosphatase+3.1.3.1
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
7943++-+---++----
7943-++-+---++---

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
7943cattle, subcutaneous granulomaBrazilBRAMiddle and South America
56774Cattle subcutaneous granulomaBrazilBRAMiddle and South America
119729Animal, Cattle, subcutaneous granulomaBrazilBRAMiddle and South America

isolation source categories

Cat1Cat2Cat3
#Infection#Inflammation
#Host#Mammals#Bovinae (Cow, Cattle)

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
7943yes2Risk group (German classification)
1197291Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Mannheimia granulomatis strain ATCC 49244 16S ribosomal RNA gene, partial sequenceAY3629131362ena85402
7943Mannheimia granulomatis strain ATCC 49244 16S ribosomal RNA gene, partial sequenceAF0539021504ena85402

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mannheimia granulomatis DSM 19156GCA_000621105scaffoldncbi1122190
66792Mannheimia granulomatis DSM 191561122190.3wgspatric1122190
66792Mannheimia granulomatis DSM 191562556921673draftimg1122190

GC content

  • @ref: 7943
  • GC-content: 39.2

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno91.402no
flagellatedno95.896no
gram-positiveno98.273no
anaerobicno98.647no
halophileno62.503no
spore-formingno98.593no
thermophileno97.442yes
glucose-utilno57.05no
aerobicno83.842no
glucose-fermentno54.069no

External links

@ref: 7943

culture collection no.: DSM 19156, ATCC 49244, CIP 103433, CCUG 45422

straininfo link

  • @ref: 80941
  • straininfo: 42378

literature

  • topic: Phylogeny
  • Pubmed-ID: 10028248
  • title: Taxonomic relationships of the [Pasteurella] haemolytica complex as evaluated by DNA-DNA hybridizations and 16S rRNA sequencing with proposal of Mannheimia haemolytica gen. nov., comb. nov., Mannheimia granulomatis comb. nov., Mannheimia glucosida sp. nov., Mannheimia ruminalis sp. nov. and Mannheimia varigena sp. nov.
  • authors: Angen O, Mutters R, Caugant DA, Olsen JE, Bisgaard M
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-49-1-67
  • year: 1999
  • mesh: Base Composition, Base Sequence, DNA, Bacterial/*analysis, Mannheimia haemolytica/*classification/genetics, *Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/*chemistry

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7943Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19156)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19156
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36558Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15230
56774Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 45422)https://www.ccug.se/strain?id=45422
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68377Automatically annotated from API NH
80941Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42378.1StrainInfo: A central database for resolving microbial strain identifiers
119729Curators of the CIPCollection of Institut Pasteur (CIP 103433)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103433