Strain identifier

BacDive ID: 11716

Type strain: Yes

Species: Haemophilus felis

Strain history: CIP <- 1993, T.J. Inzana, Reg. Coll. Vet. Med., Virginia Tech., Blacksburg, USA: strain TI189

NCBI tax ID(s): 123822 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 15437

BacDive-ID: 11716

DSM-Number: 21192

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, animal pathogen

description: Haemophilus felis DSM 21192 is a microaerophile, mesophilic, Gram-negative animal pathogen that was isolated from cat respiratory tract exudate.

NCBI tax id

  • NCBI tax id: 123822
  • Matching level: species

strain history

@refhistory
15437<- CCUG; TI 189 {2008} <- ATCC <- T. J. Inzana
397391993, T.J. Inzana, Reg. Coll. Vet. Med., Virginia Tech., Blacksburg, USA: strain TI189
119299CIP <- 1993, T.J. Inzana, Reg. Coll. Vet. Med., Virginia Tech., Blacksburg, USA: strain TI189

doi: 10.13145/bacdive11716.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Haemophilus
  • species: Haemophilus felis
  • full scientific name: Haemophilus felis Inzana et al. 1999

@ref: 15437

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Haemophilus

species: Haemophilus felis

full scientific name: Haemophilus felis Inzana et al. 1999

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.959
119299negativerod-shapedno

colony morphology

  • @ref: 119299

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15437HAEMOPHILUS MEDIUM (DSMZ Medium 804)yeshttps://mediadive.dsmz.de/medium/804Name: HAEMOPHILUS MEDIUM (DSMZ Medium 804) Composition: Mueller-Hinton broth 21.0 g/l Yeast extract 5.0 g/l Distilled water
39739MEDIUM 39 - for ActinomycesyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
119299CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
15437positivegrowth37mesophilic
39739positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
15437microaerophile
119299facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.996

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
119299nitrate+reduction17632
119299nitrite-reduction16301
68377D-fructose-builds acid from15824
68377ornithine-degradation18257

antibiotic resistance

  • @ref: 119299
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 119299
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
15437catalase+1.11.1.6
15437cytochrome-c oxidase-1.9.3.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase-3.4.11.5
68377lipase+
68377ornithine decarboxylase-4.1.1.17
119299oxidase-
119299alcohol dehydrogenase-1.1.1.1
119299catalase+1.11.1.6
119299lysine decarboxylase-4.1.1.18
119299ornithine decarboxylase-4.1.1.17
119299urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    50461C12:09.512
    50461C14:07.214
    50461C16:029.116
    50461C18:0818
    50461C12:0 ALDE ?0.610.915
    50461C13:0 ISO 2OH0.913.814
    50461C14:0 3OH/C16:1 ISO I7.315.485
    50461C16:1 ω7c1315.819
    50461C16:1 ω9c0.615.774
    50461C18:1 ω9c6.117.769
    50461C18:2 ω6,9c/C18:0 ANTE16.617.724
    50461unknown 14.5030.614.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
50461-------------------------------------------------+

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
15437+-----+++---+
15437---+--++----+
15437+---+--++----
15437++-----+++---

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119299---------------------------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic locationisolation date
15437cat respiratory tract exudateUSAUSANorth America
50461Cat respiratory tract exudate,extubated,6-year-oldUSAUSANorth AmericaVirginia,Blacksburg
119299Feline respiratory tractUnited States of AmericaUSANorth AmericaBlacksburg, Virginia1989

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Felidae (Cat)
#Host Body-Site#Oral cavity and airways#Airways
#Host Body Product#Fluids

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
15437yes2Risk group (German classification)
1192992Risk group (French classification)

Sequence information

16S sequences

  • @ref: 15437
  • description: Haemophilus felis 16S ribosomal RNA gene, partial sequence
  • accession: AF224292
  • length: 1535
  • database: ena
  • NCBI tax ID: 123822

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792[Haemophilus] felis CCUG 31170GCA_002015125scaffoldncbi123822
66792[Haemophilus] felis CCUG 31170GCA_009910635contigncbi123822
66792[Haemophilus] felis strain CCUG 31170123822.3wgspatric123822
66792[Haemophilus] felis strain CCUG 31170123822.6wgspatric123822

GC content

  • @ref: 15437
  • GC-content: 38
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno96.623no
gram-positiveno98.305no
anaerobicno95.406yes
aerobicno92.452no
halophileyes52.458no
spore-formingno98.78no
glucose-utilno57.271no
thermophileno96.957yes
glucose-fermentno52.812no
motileno90.345no

External links

@ref: 15437

culture collection no.: DSM 21192, ATCC 49733, CCUG 31170, TI 189, CIP 103890

straininfo link

  • @ref: 80935
  • straininfo: 42647

literature

  • topic: Phylogeny
  • Pubmed-ID: 32894728
  • title: Detection of Frederiksenia sp. isolated from a cat with nephritis - Short communication.
  • authors: Ujvari B, Szeredi L, Magyar T
  • journal: Acta Vet Hung
  • DOI: 10.1556/004.2020.00021
  • year: 2020
  • mesh: Animals, Cat Diseases/*microbiology, Cats, Genes, Bacterial, Microbial Sensitivity Tests/veterinary, Nephritis/microbiology/*veterinary, Pasteurellaceae/classification/*isolation & purification, Phylogeny, RNA, Bacterial/analysis, RNA, Ribosomal, 16S/analysis
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15437Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21192)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21192
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
39739Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15737
50461Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 31170)https://www.ccug.se/strain?id=31170
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68371Automatically annotated from API 50CH acid
68377Automatically annotated from API NH
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
80935Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42647.1StrainInfo: A central database for resolving microbial strain identifiers
119299Curators of the CIPCollection of Institut Pasteur (CIP 103890)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103890