Strain identifier

BacDive ID: 11715

Type strain: Yes

Species: Glaesserella parasuis

Strain Designation: 1374

Strain history: CIP <- 1984, ATCC <- 1934, NCTC <- C.H. Andrewes, Hampstead <- R.E Shope: strain 1374, Haemophilus suis

NCBI tax ID(s): 738 (species)

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General

@ref: 15713

BacDive-ID: 11715

DSM-Number: 21448

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, animal pathogen

description: Glaesserella parasuis 1374 is a microaerophile, mesophilic, Gram-negative animal pathogen of the family Pasteurellaceae.

NCBI tax id

  • NCBI tax id: 738
  • Matching level: species

strain history

@refhistory
15713<- CCUG; CCUG 3712 <- NCTC; NCTC 4557 <- C.H. Andrewes; <- R. Shope; 1374
67771<- CCUG <- NCTC <- CH Andrewes, Hampstead <- R Shope, 1374
121595CIP <- 1984, ATCC <- 1934, NCTC <- C.H. Andrewes, Hampstead <- R.E Shope: strain 1374, Haemophilus suis

doi: 10.13145/bacdive11715.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Glaesserella
  • species: Glaesserella parasuis
  • full scientific name: Glaesserella parasuis (Biberstein and White 1969) Dickerman et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Haemophilus parasuis

@ref: 15713

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Glaesserella

species: Glaesserella parasuis

full scientific name: Glaesserella parasuis (Biberstein and White 1969) Dickerman et al. 2020

strain designation: 1374

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
67771negative
121595negativerod-shapedno
125438no94.56
125438negative97

colony morphology

@refincubation period
157131-2 days
121595

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15713HAEMOPHILUS MEDIUM (DSMZ Medium 804)yeshttps://mediadive.dsmz.de/medium/804Name: HAEMOPHILUS MEDIUM (DSMZ Medium 804) Composition: Mueller-Hinton broth 21.0 g/l Yeast extract 5.0 g/l Distilled water
40262MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and NeisseriayesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml)
15713TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
121595CIP Medium 10yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=10

culture temp

@refgrowthtypetemperature
15713positivegrowth37
40262positivegrowth37
67771positivegrowth37
121595positivegrowth30-41
121595nogrowth15
121595nogrowth25
121595nogrowth45

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
15713microaerophile
67771microaerophile
121595facultative anaerobe
125439obligate aerobe96.5

spore formation

@refspore formationconfidence
125439no92.5
125438no94.966

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837727897tryptophan-energy source
6837716199urea-hydrolysis
6837718257ornithine-degradation
6837717306maltose+builds acid from
6837715824D-fructose+builds acid from
6837717634D-glucose+builds acid from
1215954853esculin-hydrolysis
121595606565hippurate-hydrolysis
12159517632nitrate+reduction
12159516301nitrite-reduction

antibiotic resistance

  • @ref: 121595
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
12159535581indoleno

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
15713catalase+1.11.1.6
15713cytochrome-c oxidase+1.9.3.1
68382alpha-fucosidase+3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
121595oxidase+
121595beta-galactosidase+3.2.1.23
121595alcohol dehydrogenase-1.1.1.1
121595catalase+1.11.1.6
121595gamma-glutamyltransferase-2.3.2.2
121595lysine decarboxylase-4.1.1.18
121595ornithine decarboxylase-4.1.1.17
121595urease-3.5.1.5
68382trypsin-3.4.21.4
68377tryptophan deaminase-4.1.99.1
68377proline-arylamidase-3.4.11.5
68377alkaline phosphatase+3.1.3.1
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    44682C12:00.512
    44682C14:01414
    44682C16:026.716
    44682C18:01.818
    44682C13:0 ANTEISO0.212.701
    44682C13:0 ISO 2OH0.413.814
    44682C14:0 3OH/C16:1 ISO I7.615.485
    44682C15:0 ANTEISO0.414.711
    44682C15:0 ISO 3OH116.135
    44682C16:1 ω5c0.315.908
    44682C16:1 ω7c34.715.819
    44682C16:1 ω9c1.315.774
    44682C18:1 ω5c0.217.919
    44682C18:1 ω7c /12t/9t0.817.824
    44682C18:1 ω9c1.817.769
    44682C18:2 ω6,9c/C18:0 ANTE1.317.724
    44682C20:1 ω7c0.219.833
    44682Unidentified0.413.763
    44682Unidentified0.313.935
    44682Unidentified1.414.279
    44682Unidentified0.215.172
    44682Unidentified2.716.296
    44682Unidentified1.618.138
    44682unknown 14.5030.414.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121595-+++-+----+--+-----+

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
15713++++---++----
15713-++++---++-+/--
15713-++++---++---

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_1723.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18;96_662;97_766;98_1362;99_1723&stattab=map
  • Last taxonomy: Glaesserella parasuis subclade
  • 16S sequence: AY362909
  • Sequence Identity:
  • Total samples: 6685
  • soil counts: 327
  • aquatic counts: 367
  • animal counts: 5953
  • plant counts: 38

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
15713yes2Risk group (German classification)
1215952Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Glaesserella parasuis strain CCUG 3712 16S ribosomal RNA gene, partial sequenceAY3629091362nuccore738
20218Haemophilus parasuis strain NCTC 4557 16S ribosomal RNA gene, partial sequenceM750651477nuccore738
15713Haemophilus parasuis DNA for 16S rRNAAB0040411473nuccore738

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Glaesserella parasuis NCTC4557GCA_900450925contigncbi738
66792Glaesserella parasuis CCUG 3712GCA_002015085scaffoldncbi738
66792[Haemophilus] parasuis strain CCUG 3712738.59wgspatric738
66792Glaesserella parasuis strain NCTC4557738.85wgspatric738
66792Glaesserella parasuis CCUG 37122837132019draftimg738
66792Glaesserella parasuis NCTC 45572834240801draftimg738

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno97no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.575no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no78.101no
125438spore-formingspore-formingAbility to form endo- or exosporesno94.966no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno96.389yes
125438motile2+flagellatedAbility to perform flagellated movementno94.56no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno92.5
125439BacteriaNetmotilityAbility to perform movementno78.6
125439BacteriaNetgram_stainReaction to gram-stainingpositive57.4
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe96.5

External links

@ref: 15713

culture collection no.: DSM 21448, ATCC 19417, CCUG 3712, CIP 100918, CIP 58.8, NCTC 4557, KCTC 15419

straininfo link

  • @ref: 80934
  • straininfo: 389327

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism7728656Contact-dependent acquisition of transferrin-bound iron by two strains of Haemophilus parasuis.Charland N, D'Silva CG, Dumont RA, Niven DFCan J Microbiol10.1139/m95-0091995Animals, Bacterial Outer Membrane Proteins/metabolism, Carrier Proteins/metabolism, Cattle, Haemophilus/classification/*metabolism, Iron/*metabolism, Iron-Binding Proteins, Lactoferrin/metabolism, Protein Binding, Species Specificity, Swine, Transferrin/*metabolism, Transferrin-Binding ProteinsPhylogeny
Phylogeny31592757Phylogenomic analysis of Haemophilus parasuis and proposed reclassification to Glaesserella parasuis, gen. nov., comb. nov.Dickerman A, Bandara AB, Inzana TJInt J Syst Evol Microbiol10.1099/ijsem.0.0037302020Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Haemophilus parasuis/*classification, Pasteurellaceae/classification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, SwineTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15713Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21448)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21448
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40262Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/12436
44682Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 3712)https://www.ccug.se/strain?id=3712
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68377Automatically annotated from API NH
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80934Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389327.1StrainInfo: A central database for resolving microbial strain identifiers
121595Curators of the CIPCollection of Institut Pasteur (CIP 100918)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20100918
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1