Strain identifier

BacDive ID: 11714

Type strain: Yes

Species: Haemophilus paraphrohaemolyticus

Strain Designation: L1, Lawton 1

Strain history: CIP <- 1986, NCTC <- 1970, K. Zinnemann, Leeds, UK: strain Lawton 1 <- S.K. Devaraj

NCBI tax ID(s): 736 (species)

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General

@ref: 15714

BacDive-ID: 11714

DSM-Number: 21451

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, rod-shaped

description: Haemophilus paraphrohaemolyticus L1 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from sputum.

NCBI tax id

  • NCBI tax id: 736
  • Matching level: species

strain history

@refhistory
15714<- CCUG; L1 {2008} <- NCTC <- K. Zinnemann, Leeds
121585CIP <- 1986, NCTC <- 1970, K. Zinnemann, Leeds, UK: strain Lawton 1 <- S.K. Devaraj

doi: 10.13145/bacdive11714.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Haemophilus
  • species: Haemophilus paraphrohaemolyticus
  • full scientific name: Haemophilus paraphrohaemolyticus Zinnemann et al. 1971 (Approved Lists 1980)

@ref: 15714

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Haemophilus

species: Haemophilus paraphrohaemolyticus

full scientific name: Haemophilus paraphrohaemolyticus Zinnemann et al. 1971

strain designation: L1, Lawton 1

type strain: yes

Morphology

cell morphology

  • @ref: 121585
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

@refincubation periodhemolysis ability
157141-2 days
1215851

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15714HAEMOPHILUS MEDIUM (DSMZ Medium 804)yeshttps://mediadive.dsmz.de/medium/804Name: HAEMOPHILUS MEDIUM (DSMZ Medium 804) Composition: Mueller-Hinton broth 21.0 g/l Yeast extract 5.0 g/l Distilled water
41319MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and NeisseriayesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml)
121585CIP Medium 10yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=10

culture temp

@refgrowthtypetemperaturerange
15714positivegrowth37mesophilic
41319positivegrowth37mesophilic
121585positivegrowth30-37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 15714
  • oxygen tolerance: microaerophile

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
121585esculin-hydrolysis4853
121585nitrate+reduction17632
121585nitrite-reduction16301
68377D-glucose+builds acid from17634
68377D-fructose+builds acid from15824
68377tryptophan-energy source27897

antibiotic resistance

  • @ref: 121585
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
12158535581indoleno

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
15714catalase+1.11.1.6
15714cytochrome-c oxidase+1.9.3.1
68377tryptophan deaminase-4.1.99.1
68377alkaline phosphatase+3.1.3.1
121585oxidase-
121585beta-galactosidase+3.2.1.23
121585alcohol dehydrogenase-1.1.1.1
121585catalase+1.11.1.6
121585lysine decarboxylase-4.1.1.18
121585ornithine decarboxylase-4.1.1.17
121585tryptophan deaminase-
121585urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121585-+---+----++-+------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
121585------------------------------------------------+

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
15714++++-+-++----
15714++++/--+-++-+-
15714-++++-+-++---
15714-++++/--+-++-+

Isolation, sampling and environmental information

isolation

@refsample type
15714sputum
44688Sputum
121585Human, Sputum

isolation source categories

  • Cat1: #Host Body Product
  • Cat2: #Fluids
  • Cat3: #Sputum

taxonmaps

  • @ref: 69479
  • File name: preview.99_2775.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18;96_1251;97_1484;98_1809;99_2775&stattab=map
  • Last taxonomy: Haemophilus paraphrohaemolyticus
  • 16S sequence: NR_118142
  • Sequence Identity:
  • Total samples: 41558
  • soil counts: 632
  • aquatic counts: 616
  • animal counts: 40006
  • plant counts: 304

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
157142Risk group (German classification)
1215852Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Haemophilus paraphrohaemolyticus strain NCTC 10670 16S ribosomal RNA gene, partial sequenceJF5066401362ena736
15714Haemophilus paraphrohaemolyticus strain NCTC 10670 16S ribosomal RNA, partial sequenceNR_1181421362nuccore736

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Haemophilus paraphrohaemolyticus CCUG 3718GCA_002015045scaffoldncbi736
66792Haemophilus paraphrohaemolyticus strain CCUG 3718736.3wgspatric736
66792Haemophilus paraphrohaemolyticus HK411, NCTC 106702531839472draftimg1095743
66792Haemophilus paraphrohaemolyticus CCUG 37182879044333draftimg736

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno93.946no
gram-positiveno98.501no
anaerobicno96.854no
aerobicno95.197no
halophileno55.424no
spore-formingno98.558no
glucose-utilno53.833no
thermophileno97.396yes
motileno92.096no
glucose-fermentno50.686no

External links

@ref: 15714

culture collection no.: DSM 21451, ATCC 29237, CCUG 3718, CIP 102512, NCTC 10670

straininfo link

  • @ref: 80933
  • straininfo: 45850

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15714Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21451)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21451
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41319Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14207
44688Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 3718)https://www.ccug.se/strain?id=3718
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68377Automatically annotated from API NH
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80933Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45850.1StrainInfo: A central database for resolving microbial strain identifiers
121585Curators of the CIPCollection of Institut Pasteur (CIP 102512)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102512